QTL associated with Avp transcript abundance QTL 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (4955366)
QTL associated with Crhr1 transcript abundance QTL 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (4955366)
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Atrial fibrillation. The EFO term atrial fibrillation was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
PT Ellinor, KL Lunetta, NL Glazer, A Pfeufer, A Alonso, MK Chung, MF Sinner, PI de Bakker, M Mueller, SA Lubitz, E Fox, D Darbar, NL Smith, JD Smith, RB Schnabel, EZ Soliman, KM Rice, DR Van Wagoner, BM Beckmann, C van Noord, K Wang, GB Ehret, JI Rotter, SL Hazen, G Steinbeck, AV Smith, LJ Launer, TB Harris, S Makino, M Nelis, DJ Milan, S Perz, T Esko, A Köttgen, S Moebus, C Newton-Cheh, M Li, S Möhlenkamp, TJ Wang, WH Kao, RS Vasan, MM Nöthen, CA MacRae, BH Stricker, A Hofman, AG Uitterlinden, D Levy, E Boerwinkle, A Metspalu, EJ Topol, A Chakravarti, V Gudnason, BM Psaty, DM Roden, T Meitinger, HE Wichmann, JC Witteman, J Barnard, DE Arking, EJ Benjamin, SR Heckbert, S Kääb
QTL associated with modifier of mammary tumor progression 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (31118079)
QTL associated with Streptococcus pneumoniae infection resistance 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (28391392)
Authors:
Denny P, Hopes E, Gingles N, Broman KW, McPheat W, Morten J, Alexander J, Andrew PW, Brown SD
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Atrial fibrillation. The EFO term atrial fibrillation was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
EJ Benjamin, KM Rice, DE Arking, A Pfeufer, C van Noord, AV Smith, RB Schnabel, JC Bis, E Boerwinkle, MF Sinner, A Dehghan, SA Lubitz, RB D'Agostino, T Lumley, GB Ehret, J Heeringa, T Aspelund, C Newton-Cheh, MG Larson, KD Marciante, EZ Soliman, F Rivadeneira, TJ Wang, G EirÃksdottir, D Levy, BM Psaty, M Li, AM Chamberlain, A Hofman, RS Vasan, TB Harris, JI Rotter, WH Kao, SK Agarwal, BH Stricker, K Wang, LJ Launer, NL Smith, A Chakravarti, AG Uitterlinden, PA Wolf, N Sotoodehnia, A Köttgen, CM van Duijn, T Meitinger, M Mueller, S Perz, G Steinbeck, HE Wichmann, KL Lunetta, SR Heckbert, V Gudnason, A Alonso, S Kääb, PT Ellinor, JC Witteman
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Atrial fibrillation. The EFO term atrial fibrillation was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
DF Gudbjartsson, H Holm, S Gretarsdottir, G Thorleifsson, GB Walters, G Thorgeirsson, J Gulcher, EB Mathiesen, I Njølstad, A Nyrnes, T Wilsgaard, EM Hald, K Hveem, C Stoltenberg, G Kucera, T Stubblefield, S Carter, D Roden, MC Ng, L Baum, WY So, KS Wong, JC Chan, C Gieger, HE Wichmann, A Gschwendtner, M Dichgans, G Kuhlenbäumer, K Berger, EB Ringelstein, S Bevan, HS Markus, K Kostulas, J Hillert, S Sveinbjörnsdóttir, EM Valdimarsson, ML Løchen, RC Ma, D Darbar, A Kong, DO Arnar, U Thorsteinsdottir, K Stefansson
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Atrial fibrillation/atrial flutter. The EFO term atrial fibrillation was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
DF Gudbjartsson, DO Arnar, A Helgadottir, S Gretarsdottir, H Holm, A Sigurdsson, A Jonasdottir, A Baker, G Thorleifsson, K Kristjansson, A Palsson, T Blondal, P Sulem, VM Backman, GA Hardarson, E Palsdottir, A Helgason, R Sigurjonsdottir, JT Sverrisson, K Kostulas, MC Ng, L Baum, WY So, KS Wong, JC Chan, KL Furie, SM Greenberg, M Sale, P Kelly, CA MacRae, EE Smith, J Rosand, J Hillert, RC Ma, PT Ellinor, G Thorgeirsson, JR Gulcher, A Kong, U Thorsteinsdottir, K Stefansson
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Stroke (ischemic). The EFO term stroke was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
S Gretarsdottir, G Thorleifsson, A Manolescu, U Styrkarsdottir, A Helgadottir, A Gschwendtner, K Kostulas, G Kuhlenbäumer, S Bevan, T Jonsdottir, H Bjarnason, J Saemundsdottir, S Palsson, DO Arnar, H Holm, G Thorgeirsson, EM Valdimarsson, S Sveinbjörnsdottir, C Gieger, K Berger, HE Wichmann, J Hillert, H Markus, JR Gulcher, EB Ringelstein, A Kong, M Dichgans, DF Gudbjartsson, U Thorsteinsdottir, K Stefansson
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Ischemic stroke (undetermined subtype). The EFO term Ischemic stroke was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
QTL associated with modifier of mammary tumor growth 3. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (19580218)
Authors:
Le Voyer T, Rouse J, Lu Z, Lifsted T, Williams M, Hunter KW
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "biological_process", which is defined as "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.12.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular response to chemical stimulus", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.12.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular process", which is defined as "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.12.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to chemical", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.12.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular response to stimulus", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.12.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to stimulus", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.12.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
GeneWeaver