Data

This page is created dynamically every 24 hours and lists all current GeneWeaver species, gene identifier sources, and microarray platforms. We cannot include certain identifiers such as RefSeq or GenBank due to scalabilty concerns. For example: Entrez Nucleotide (which includes RefSeq and GenBank) has over 400x more identifiers than Entrez Gene for Mouse. A list of partner Data Sources can be found here.

If you would like to request a new species, please email geneweaver.web@gmail.com, and include the NCBI Taxonomy ID (found here). Please make sure that the Taxid you select has directly linked Entrez Gene records. This information is found in the the table below. For example, Saccharomyces cerevisiae (Taxid 4932) has no direct Gene links, but S. cerevisiae S288c (Taxid 559292) has over 6,000.

Species NameTaxIDDate Species Added
Mus musculus 10090 2011-03-14
Homo sapiens 9606 2011-03-14
Rattus norvegicus 10116 2011-03-14
Danio rerio 7955 2011-03-14
Drosophila melanogaster 7227 2011-03-14
Macaca mulatta 9544 2011-03-14
Caenorhabditis elegans 6239 2011-03-14
Saccharomyces cerevisiae 4932 2011-03-14
Gallus gallus 9031 2013-07-30
Canis familiaris 9615 2015-06-05

If you would like to request a new microarray platform, please find the GEO Platform number and make sure the data table includes gene identifiers (preferably Entrez Gene IDs, or Ensembl Gene IDs). For example, GPL2700 (Sentrix® HumanRef-8 BeadChip) does not include any supported gene identifiers, so we cannot read it at this time. Please email geneweaver.web@gmail.com with any questions.

GEO PlatformNameLast UpdateProbe ID Count(Mapped to)Gene Count
GPL32 Affymetrix Murine Genome U74A 2011-03-14 14:17:30.159779 12655 10919 8760
GPL33 Affymetrix Murine Genome U74B 2011-03-14 14:17:30.159779 12637 8584 6415
GPL34 Affymetrix Murine Genome U74C 2011-03-14 14:17:30.159779 12729 5111 4144
GPL75 Affymetrix Murine 11K SubA 2011-03-14 14:17:30.159779 6585 5916 5093
GPL76 Affymetrix Murine 11K SubB 2011-03-14 14:17:30.159779 6596 2189 1915
GPL81 Affymetrix Murine Genome U74 Version 2 2011-03-14 14:17:30.159779 12489 11477 8782
GPL82 Affymetrix Murine Genome U74 Version 2 2011-03-14 14:17:30.159779 12478 10953 7829
GPL83 Affymetrix Murine Genome U74 Version 2 2011-03-14 14:17:30.159779 11935 8165 6302
GPL90 Affymetrix Yeast Genome S98 Array 2011-03-14 14:17:30.159779 9336 5034 4864
GPL96 Affymetrix Human Genome U133A 2011-03-14 14:17:30.159779 22284 20211 12544
GPL97 Affymetrix Human Genome U133B 2011-03-14 14:17:30.159779 22646 14048 8840
GPL98 Affymetrix Human 35K SubA 2011-03-14 14:17:30.159779 8935 7609 5754
GPL99 Affymetrix Human 35K SubB 2011-03-14 14:17:30.159779 8925 4948 4158
GPL100 Affymetrix Human 35K SubC 2011-03-14 14:17:30.159779 8929 5581 4612
GPL101 Affymetrix Human 35K SubD 2011-03-14 14:17:30.159779 8929 5451 4432
GPL200 Affymetrix C. elegans Genome Array 2011-03-14 14:17:30.159779 22626 17030 13969
GPL201 Affymetrix Human HG-Focus Target 2011-03-14 14:17:30.159779 8794 8445 8300
GPL339 Affymetrix Mouse Expression 430A 2011-03-14 14:17:30.159779 22691 21462 13071
GPL340 Affymetrix Mouse Expression 430B 2011-03-14 14:17:30.159779 22576 16727 11134
GPL341 Affymetrix Rat Expression 230A 2011-03-14 14:17:30.159779 15924 12694 10335
GPL342 Affymetrix Rat Expression 230B 2011-03-14 14:17:30.159779 15334 7667 5812
GPL570 Affymetrix Human Genome U133 Plus 2.0 2011-03-14 14:17:30.159779 54676 39316 18215
GPL571 Affymetrix Human Genome U133A 2.0 2011-03-14 14:17:30.159779 22278 20210 12544
GPL1261 Affymetrix Mouse Genome 430 2.0 2018-10-04 16:12:46.050989 38589 37429 20074
GPL1319 Affymetrix Zebrafish Genome 2011-03-14 14:17:30.159779 15618 11544 9484
GPL1322 Affymetrix Drosophila Genome 2.0 2011-03-14 14:17:30.159779 18953 13811 12374
GPL1355 Affymetrix Rat Genome 230 2.0 2011-03-14 14:17:30.159779 31100 20130 13963
GPL2529 Affymetrix Yeast Genome 2.0 Array 2011-03-14 14:17:30.159779 10929 4915 4875
GPL3535 Affymetrix Rhesus Macaque Genome 2011-03-14 14:17:30.159779 52866 25177 14361
GPL3921 Affymetrix HT Human Genome U133A 2011-03-14 14:17:30.159779 22278 20269 12467
GPL6096 Affymetrix Mouse Exon 1.0 ST 2011-03-14 14:17:30.159779 283952 0 0
GPL6102 Illumina Human-6 v2.0 2011-03-14 14:17:30.159779 97405 22987 18115
GPL6105 Illumina MouseWG-6 v1.1 2011-03-14 14:17:30.159779 93265 31383 18570
GPL6246 Affymetrix Mouse Gene 1.0 ST Array 2011-07-08 16:56:33.633851 35558 21903 19456
GPL6466 Agilent Mouse G4121A (Toxicogenomics) 2011-03-14 14:17:30.159779 20873 19077 17648
GPL6543 Affymetrix Rat Exon 1.0 ST 2011-03-14 14:17:30.159779 361289 0 0
GPL6885 Illumina MouseRef-8 v2.0 2011-03-14 14:17:30.159779 51395 24866 17163
GPL6887 Illumina MouseWG-6 v2.0 2011-03-14 14:17:30.159779 90563 36732 20227
GPL7202 Agilent Mouse Whole Genome G4122F 2011-03-14 14:17:30.159779 41283 34767 21103
GPL8321 Affymetrix Mouse Genome 430A 2.0 2011-03-14 14:17:30.159779 22691 21462 13071
GPL10334 Agilent Whole Rat Genome 4x44K v2 2016-03-08 15:59:37.353908 26398 26196 22449
GPL10739 Affymetrix Human Gene 1.0 ST 2016-03-02 12:46:15.664203 242024 0 0
GPL11202 Agilent Mouse GE 4x44K v2 2016-03-02 12:51:20.094652 31151 0 0
Ontology NameLast UpdateTerm Count
Adult Mouse Anatomy 2018-12-18 2956
Chemical Entities of Biological Interest 2018-12-18 107006
Disease Ontology 2018-12-18 8235
EMBRACE Data and Methods 2018-12-18 2746
Evidence and Conclusion Ontology 2018-12-18 794
Experimental Factor Ontology 2018-12-18 8142
Gene Ontology 2018-12-18 30533
Human Phenotype Ontology 2018-12-18 12166
Mammalian Phenotype 2018-12-18 7385
Mesh Terms 2018-12-18 26139
Relation Ontology 2018-07-27 559
Database NameSpeciesLast UpdateGenes per Species
Entrez Mus musculus 2019-01-05 50192
Entrez Homo sapiens 2019-01-05 22555
Entrez Rattus norvegicus 2019-01-05 44399
Entrez Danio rerio 2019-01-05 26001
Entrez Drosophila melanogaster 2019-01-05 24990
Entrez Macaca mulatta 2019-01-05 39714
Entrez Caenorhabditis elegans 2019-01-05 20068
Entrez Gallus gallus 2019-01-05 29448
Entrez Canis familiaris 2019-01-05 36943
Ensembl Gene Mus musculus 2019-01-05 53994
Ensembl Gene Homo sapiens 2019-01-05 25744
Ensembl Gene Rattus norvegicus 2019-01-05 20441
Ensembl Gene Danio rerio 2019-01-05 27558
Ensembl Gene Macaca mulatta 2019-01-05 16331
Ensembl Gene Gallus gallus 2019-01-05 12214
Ensembl Gene Canis familiaris 2019-01-05 14773
Ensembl Transcript Mus musculus 2019-01-05 138145
Unigene Mus musculus 2019-01-05 183549
Unigene Homo sapiens 2019-01-05 273077
Unigene Rattus norvegicus 2019-01-05 79209
Unigene Danio rerio 2019-01-05 64700
Unigene Drosophila melanogaster 2019-01-05 30648
Unigene Macaca mulatta 2019-01-05 24102
Unigene Caenorhabditis elegans 2019-01-05 33230
Unigene Gallus gallus 2019-01-05 19271
Unigene Canis familiaris 2019-01-05 22220
Gene Symbol Mus musculus 2019-01-05 134571
Gene Symbol Homo sapiens 2019-01-05 73166
Gene Symbol Rattus norvegicus 2019-01-05 55941
Gene Symbol Danio rerio 2019-01-05 158148
Gene Symbol Drosophila melanogaster 2019-01-05 265683
Gene Symbol Macaca mulatta 2019-01-05 46805
Gene Symbol Caenorhabditis elegans 2019-01-05 20334
Gene Symbol Saccharomyces cerevisiae 2019-01-05 10940
Gene Symbol Gallus gallus 2019-01-05 35891
Gene Symbol Canis familiaris 2019-01-05 36944
MGI Mus musculus 2019-01-05 65569
HGNC Homo sapiens 2019-01-05 22559
RGD Rattus norvegicus 2019-01-05 44523
ZFIN Danio rerio 2019-01-05 122410
FlyBase Drosophila melanogaster 2019-01-05 185214
Wormbase Caenorhabditis elegans 2019-01-05 20096
SGD Saccharomyces cerevisiae 2019-01-05 5911
miRBase Mus musculus 2019-01-05 1184
miRBase Rattus norvegicus 2019-01-05 456
miRBase Danio rerio 2019-01-05 308
miRBase Drosophila melanogaster 2019-01-05 256
miRBase Gallus gallus 2019-01-05 739
CGNC Gallus gallus 2019-01-05 29517