Data

This page is created dynamically every 24 hours and lists all current GeneWeaver species, gene identifier sources, and microarray platforms. We cannot include certain identifiers such as RefSeq or GenBank due to scalabilty concerns. For example: Entrez Nucleotide (which includes RefSeq and GenBank) has over 400x more identifiers than Entrez Gene for Mouse. A list of partner Data Sources can be found here.

If you would like to request a new species, please email geneweaver.web@gmail.com, and include the NCBI Taxonomy ID (found here). Please make sure that the Taxid you select has directly linked Entrez Gene records. This information is found in the the table below. For example, Saccharomyces cerevisiae (Taxid 4932) has no direct Gene links, but S. cerevisiae S288c (Taxid 559292) has over 6,000.

Species NameTaxID
Mus musculus 10090
Homo sapiens 9606
Rattus norvegicus 10116
Danio rerio 7955
Drosophila melanogaster 7227
Macaca mulatta 9544
Caenorhabditis elegans 6239
Saccharomyces cerevisiae 559292
Gallus gallus 9031
Canis familiaris 9615

If you would like to request a new microarray platform, please find the GEO Platform number and make sure the data table includes gene identifiers (preferably Entrez Gene IDs, or Ensembl Gene IDs). For example, GPL2700 (Sentrix® HumanRef-8 BeadChip) does not include any supported gene identifiers, so we cannot read it at this time. Please email geneweaver.web@gmail.com with any questions.

GEO PlatformNameLast UpdateProbe ID Count(Mapped to)Gene Count
GPL32 Affymetrix Murine Genome U74A 2011-03-14 14:17:30.159779 12655 10814 8660
GPL33 Affymetrix Murine Genome U74B 2011-03-14 14:17:30.159779 12637 8447 6281
GPL34 Affymetrix Murine Genome U74C 2011-03-14 14:17:30.159779 12729 4938 3987
GPL75 Affymetrix Murine 11K SubA 2011-03-14 14:17:30.159779 6585 5868 5044
GPL76 Affymetrix Murine 11K SubB 2011-03-14 14:17:30.159779 6596 2163 1891
GPL81 Affymetrix Murine Genome U74 Version 2 2011-03-14 14:17:30.159779 12489 11402 8709
GPL82 Affymetrix Murine Genome U74 Version 2 2011-03-14 14:17:30.159779 12478 10805 7685
GPL83 Affymetrix Murine Genome U74 Version 2 2011-03-14 14:17:30.159779 11935 7912 6064
GPL90 Affymetrix Yeast Genome S98 Array 2011-03-14 14:17:30.159779 9336 5899 5648
GPL96 Affymetrix Human Genome U133A 2011-03-14 14:17:30.159779 22284 20268 12571
GPL97 Affymetrix Human Genome U133B 2011-03-14 14:17:30.159779 22646 14316 9033
GPL98 Affymetrix Human 35K SubA 2011-03-14 14:17:30.159779 8935 7653 5788
GPL99 Affymetrix Human 35K SubB 2011-03-14 14:17:30.159779 8925 5011 4210
GPL100 Affymetrix Human 35K SubC 2011-03-14 14:17:30.159779 8929 5652 4669
GPL101 Affymetrix Human 35K SubD 2011-03-14 14:17:30.159779 8929 5525 4496
GPL200 Affymetrix C. elegans Genome Array 2011-03-14 14:17:30.159779 22626 16458 13495
GPL201 Affymetrix Human HG-Focus Target 2011-03-14 14:17:30.159779 8794 8456 8303
GPL339 Affymetrix Mouse Expression 430A 2011-03-14 14:17:30.159779 22691 21312 12936
GPL340 Affymetrix Mouse Expression 430B 2011-03-14 14:17:30.159779 22576 15357 10093
GPL341 Affymetrix Rat Expression 230A 2011-03-14 14:17:30.159779 15924 12526 10173
GPL342 Affymetrix Rat Expression 230B 2011-03-14 14:17:30.159779 15334 7462 5628
GPL570 Affymetrix Human Genome U133 Plus 2.0 2011-03-14 14:17:30.159779 54676 39941 18598
GPL571 Affymetrix Human Genome U133A 2.0 2011-03-14 14:17:30.159779 22278 20267 12571
GPL1261 Affymetrix Mouse Genome 430 2.0 2018-10-04 16:12:46.050989 38589 36024 18965
GPL1319 Affymetrix Zebrafish Genome 2011-03-14 14:17:30.159779 15618 11555 9475
GPL1322 Affymetrix Drosophila Genome 2.0 2011-03-14 14:17:30.159779 18953 13809 12319
GPL1355 Affymetrix Rat Genome 230 2.0 2011-03-14 14:17:30.159779 31100 19748 13630
GPL2529 Affymetrix Yeast Genome 2.0 Array 2011-03-14 14:17:30.159779 10929 5700 5612
GPL3535 Affymetrix Rhesus Macaque Genome 2011-03-14 14:17:30.159779 52866 18966 10251
GPL3921 Affymetrix HT Human Genome U133A 2011-03-14 14:17:30.159779 22278 20344 12495
GPL4234 Illumina Sentrix Mouse-6 Expression BeadChip 2019-08-13 12:16:53.088264 30713 30618 18271
GPL6096 Affymetrix Mouse Exon 1.0 ST 2011-03-14 14:17:30.159779 283952 0 0
GPL6102 Illumina Human-6 v2.0 2011-03-14 14:17:30.159779 97405 23241 18312
GPL6105 Illumina MouseWG-6 v1.1 2011-03-14 14:17:30.159779 93265 31139 18353
GPL6246 Affymetrix Mouse Gene 1.0 ST Array 2011-07-08 16:56:33.633851 35558 21755 19296
GPL6466 Agilent Mouse G4121A (Toxicogenomics) 2011-03-14 14:17:30.159779 20873 18858 17406
GPL6543 Affymetrix Rat Exon 1.0 ST 2011-03-14 14:17:30.159779 361289 0 0
GPL6885 Illumina MouseRef-8 v2.0 2011-03-14 14:17:30.159779 51395 24754 17061
GPL6887 Illumina MouseWG-6 v2.0 2011-03-14 14:17:30.159779 90563 36307 19831
GPL6947 Illumina HumanHT-12 V3.0 expression beadchip 2019-08-13 11:56:14.568730 28082 26213 17527
GPL7202 Agilent Mouse Whole Genome G4122F 2011-03-14 14:17:30.159779 41283 33967 20335
GPL8300 Affymetrix Human Genome U95 Version 2 Array 2019-08-13 11:56:14.568730 11992 11324 8486
GPL8321 Affymetrix Mouse Genome 430A 2.0 2011-03-14 14:17:30.159779 22691 21312 12936
GPL10334 Agilent Whole Rat Genome 4x44K v2 2016-03-08 15:59:37.353908 26398 23014 19429
GPL10739 Affymetrix Human Gene 1.0 ST 2016-03-02 12:46:15.664203 242024 0 0
GPL11202 Agilent Mouse GE 4x44K v2 2016-03-02 12:51:20.094652 31151 0 0
GPL13912 Agilent G3 Mouse GE 8x60K Microarray 2019-08-13 11:56:14.568730 75191 24209 17230
GPL14550 Agilent SurePrint G3 Human GE 8x60K Microarray 2019-08-13 11:56:14.568730 26766 26713 18988
Ontology NameLast UpdateTerm Count
Adult Mouse Anatomy 2020-09-22 3231
Chemical Entities of Biological Interest 2020-09-22 107006
Disease Ontology 2020-09-22 8235
EMBRACE Data and Methods 2020-09-22 2746
Evidence and Conclusion Ontology 2020-09-22 794
Experimental Factor Ontology 2020-09-22 8142
Gene Ontology 2020-09-22 46329
Human Phenotype Ontology 2020-09-22 12166
JAX Mouse Strains 2020-09-22 9834
Mammalian Phenotype 2020-09-22 13294
Measurement Method Ontology 2020-09-22 670
Mesh Terms 2020-09-22 26139
Relation Ontology 2020-09-22 559
Uber Anatomy Ontology 2020-09-22 13847
Vertebrate Trait Ontology 2020-09-22 3461
Database NameSpeciesLast UpdateGenes per Species
Entrez Mus musculus 2020-05-05 51675
Entrez Homo sapiens 2020-05-05 38045
Entrez Rattus norvegicus 2020-05-05 44486
Entrez Danio rerio 2020-05-05 26004
Entrez Drosophila melanogaster 2020-05-05 25093
Entrez Macaca mulatta 2020-05-05 33031
Entrez Caenorhabditis elegans 2020-05-05 20014
Entrez Saccharomyces cerevisiae 2020-05-05 6439
Entrez Gallus gallus 2020-05-05 27666
Entrez Canis familiaris 2020-05-05 36943
Ensembl Gene Mus musculus 2020-05-05 55900
Ensembl Gene Homo sapiens 2020-05-05 42520
Ensembl Gene Rattus norvegicus 2020-05-05 21678
Ensembl Gene Danio rerio 2020-05-05 27936
Ensembl Gene Gallus gallus 2020-05-05 13534
Ensembl Gene Canis familiaris 2020-05-05 17029
Ensembl Transcript Mus musculus 2020-05-05 144246
Unigene Mus musculus 2020-05-05 182508
Unigene Homo sapiens 2020-05-05 282168
Unigene Rattus norvegicus 2020-05-05 79206
Unigene Danio rerio 2020-05-05 64877
Unigene Drosophila melanogaster 2020-05-05 31201
Unigene Macaca mulatta 2020-05-05 20105
Unigene Caenorhabditis elegans 2020-05-05 32481
Unigene Gallus gallus 2020-05-05 18134
Unigene Canis familiaris 2020-05-05 21813
Gene Symbol Mus musculus 2020-05-05 134664
Gene Symbol Homo sapiens 2020-05-05 98905
Gene Symbol Rattus norvegicus 2020-05-05 65709
Gene Symbol Danio rerio 2020-05-05 161778
Gene Symbol Drosophila melanogaster 2020-05-05 268925
Gene Symbol Macaca mulatta 2020-05-05 20056
Gene Symbol Caenorhabditis elegans 2020-05-05 47118
Gene Symbol Saccharomyces cerevisiae 2020-05-05 16118
Gene Symbol Gallus gallus 2020-05-05 35954
Gene Symbol Canis familiaris 2020-05-05 37537
MGI Mus musculus 2020-05-05 64973
HGNC Homo sapiens 2020-05-05 38055
RGD Rattus norvegicus 2020-05-05 56576
ZFIN Danio rerio 2020-05-05 125252
FlyBase Drosophila melanogaster 2020-05-05 185344
Wormbase Caenorhabditis elegans 2020-05-05 46903
SGD Saccharomyces cerevisiae 2020-05-05 8016
miRBase Mus musculus 2020-05-05 1221
miRBase Homo sapiens 2020-05-05 1854
miRBase Rattus norvegicus 2020-05-05 496
miRBase Danio rerio 2020-05-05 308
miRBase Drosophila melanogaster 2020-05-05 258
miRBase Gallus gallus 2020-05-05 738
CGNC Gallus gallus 2020-05-05 28385