This page is created dynamically every 24 hours and lists all current GeneWeaver species, gene identifier sources, and microarray platforms. We cannot include certain identifiers such as RefSeq or GenBank due to scalabilty concerns. For example: Entrez Nucleotide (which includes RefSeq and GenBank) has over 400x more identifiers than Entrez Gene for Mouse. A list of partner Data Sources can be found here.
If you would like to request a new species, please email geneweaver.web@gmail.com, and include the NCBI Taxonomy ID (found here). Please make sure that the Taxid you select has directly linked Entrez Gene records. This information is found in the the table below. For example, Saccharomyces cerevisiae (Taxid 4932) has no direct Gene links, but S. cerevisiae S288c (Taxid 559292) has over 6,000.
| Species Name | TaxID |
|---|---|
| Mus musculus | 10090 |
| Homo sapiens | 9606 |
| Rattus norvegicus | 10116 |
| Danio rerio | 7955 |
| Drosophila melanogaster | 7227 |
| Macaca mulatta | 9544 |
| Caenorhabditis elegans | 6239 |
| Saccharomyces cerevisiae | 559292 |
| Gallus gallus | 9031 |
| Canis familiaris | 9615 |
If you would like to request a new microarray platform, please find the GEO Platform number and make sure the data table includes gene identifiers (preferably Entrez Gene IDs, or Ensembl Gene IDs). For example, GPL2700 (Sentrix® HumanRef-8 BeadChip) does not include any supported gene identifiers, so we cannot read it at this time. Please email geneweaver.web@gmail.com with any questions.
| GEO Platform | Name | Last Update | Probe ID Count | (Mapped to) | Gene Count |
|---|---|---|---|---|---|
| GPL32 | Affymetrix Murine Genome U74A | 2011-03-14 14:17:30.159779 | 12655 | 10809 | 8652 |
| GPL33 | Affymetrix Murine Genome U74B | 2011-03-14 14:17:30.159779 | 12637 | 8394 | 6237 |
| GPL34 | Affymetrix Murine Genome U74C | 2011-03-14 14:17:30.159779 | 12729 | 4903 | 3960 |
| GPL75 | Affymetrix Murine 11K SubA | 2011-03-14 14:17:30.159779 | 6585 | 5860 | 5035 |
| GPL76 | Affymetrix Murine 11K SubB | 2011-03-14 14:17:30.159779 | 6596 | 2165 | 1893 |
| GPL81 | Affymetrix Murine Genome U74 Version 2 | 2011-03-14 14:17:30.159779 | 12489 | 11397 | 8701 |
| GPL82 | Affymetrix Murine Genome U74 Version 2 | 2011-03-14 14:17:30.159779 | 12478 | 10793 | 7672 |
| GPL83 | Affymetrix Murine Genome U74 Version 2 | 2011-03-14 14:17:30.159779 | 11935 | 7909 | 6060 |
| GPL90 | Affymetrix Yeast Genome S98 Array | 2011-03-14 14:17:30.159779 | 9336 | 5758 | 5506 |
| GPL96 | Affymetrix Human Genome U133A | 2011-03-14 14:17:30.159779 | 22284 | 20307 | 12594 |
| GPL97 | Affymetrix Human Genome U133B | 2011-03-14 14:17:30.159779 | 22646 | 14356 | 9056 |
| GPL98 | Affymetrix Human 35K SubA | 2011-03-14 14:17:30.159779 | 8935 | 7665 | 5797 |
| GPL99 | Affymetrix Human 35K SubB | 2011-03-14 14:17:30.159779 | 8925 | 5017 | 4217 |
| GPL100 | Affymetrix Human 35K SubC | 2011-03-14 14:17:30.159779 | 8929 | 5661 | 4676 |
| GPL101 | Affymetrix Human 35K SubD | 2011-03-14 14:17:30.159779 | 8929 | 5532 | 4501 |
| GPL200 | Affymetrix C. elegans Genome Array | 2011-03-14 14:17:30.159779 | 22626 | 16021 | 13131 |
| GPL201 | Affymetrix Human HG-Focus Target | 2011-03-14 14:17:30.159779 | 8794 | 8469 | 8314 |
| GPL339 | Affymetrix Mouse Expression 430A | 2011-03-14 14:17:30.159779 | 22691 | 21297 | 12916 |
| GPL340 | Affymetrix Mouse Expression 430B | 2011-03-14 14:17:30.159779 | 22576 | 15355 | 10090 |
| GPL341 | Affymetrix Rat Expression 230A | 2011-03-14 14:17:30.159779 | 15924 | 12455 | 10114 |
| GPL342 | Affymetrix Rat Expression 230B | 2011-03-14 14:17:30.159779 | 15334 | 7400 | 5567 |
| GPL570 | Affymetrix Human Genome U133 Plus 2.0 | 2011-03-14 14:17:30.159779 | 54676 | 40033 | 18640 |
| GPL571 | Affymetrix Human Genome U133A 2.0 | 2011-03-14 14:17:30.159779 | 22278 | 20306 | 12594 |
| GPL1261 | Affymetrix Mouse Genome 430 2.0 | 2018-10-04 16:12:46.050989 | 38589 | 36008 | 18948 |
| GPL1319 | Affymetrix Zebrafish Genome | 2011-03-14 14:17:30.159779 | 15618 | 11553 | 9468 |
| GPL1322 | Affymetrix Drosophila Genome 2.0 | 2011-03-14 14:17:30.159779 | 18953 | 13804 | 12296 |
| GPL1355 | Affymetrix Rat Genome 230 2.0 | 2011-03-14 14:17:30.159779 | 31100 | 19612 | 13513 |
| GPL2529 | Affymetrix Yeast Genome 2.0 Array | 2011-03-14 14:17:30.159779 | 10929 | 5699 | 5607 |
| GPL3535 | Affymetrix Rhesus Macaque Genome | 2011-03-14 14:17:30.159779 | 52866 | 19095 | 10311 |
| GPL3921 | Affymetrix HT Human Genome U133A | 2011-03-14 14:17:30.159779 | 22278 | 20388 | 12523 |
| GPL4234 | Illumina Sentrix Mouse-6 Expression BeadChip | 2019-08-13 12:16:53.088264 | 30713 | 30583 | 18232 |
| GPL6096 | Affymetrix Mouse Exon 1.0 ST | 2011-03-14 14:17:30.159779 | 283952 | 0 | 0 |
| GPL6102 | Illumina Human-6 v2.0 | 2011-03-14 14:17:30.159779 | 97405 | 23291 | 18344 |
| GPL6105 | Illumina MouseWG-6 v1.1 | 2011-03-14 14:17:30.159779 | 93265 | 31100 | 18316 |
| GPL6246 | Affymetrix Mouse Gene 1.0 ST Array | 2011-07-08 16:56:33.633851 | 35558 | 21709 | 19250 |
| GPL6466 | Agilent Mouse G4121A (Toxicogenomics) | 2011-03-14 14:17:30.159779 | 20873 | 18802 | 17351 |
| GPL6543 | Affymetrix Rat Exon 1.0 ST | 2011-03-14 14:17:30.159779 | 361289 | 0 | 0 |
| GPL6885 | Illumina MouseRef-8 v2.0 | 2011-03-14 14:17:30.159779 | 51395 | 24727 | 17031 |
| GPL6887 | Illumina MouseWG-6 v2.0 | 2011-03-14 14:17:30.159779 | 90563 | 36271 | 19788 |
| GPL6947 | Illumina HumanHT-12 V3.0 expression beadchip | 2019-08-13 11:56:14.568730 | 28082 | 26254 | 17556 |
| GPL7202 | Agilent Mouse Whole Genome G4122F | 2011-03-14 14:17:30.159779 | 41283 | 33932 | 20300 |
| GPL8300 | Affymetrix Human Genome U95 Version 2 Array | 2019-08-13 11:56:14.568730 | 11992 | 11335 | 8493 |
| GPL8321 | Affymetrix Mouse Genome 430A 2.0 | 2011-03-14 14:17:30.159779 | 22691 | 21297 | 12916 |
| GPL10334 | Agilent Whole Rat Genome 4x44K v2 | 2016-03-08 15:59:37.353908 | 26398 | 21577 | 18086 |
| GPL10739 | Affymetrix Human Gene 1.0 ST | 2016-03-02 12:46:15.664203 | 242024 | 0 | 0 |
| GPL11202 | Agilent Mouse GE 4x44K v2 | 2016-03-02 12:51:20.094652 | 31151 | 0 | 0 |
| GPL13912 | Agilent G3 Mouse GE 8x60K Microarray | 2019-08-13 11:56:14.568730 | 75191 | 24167 | 17186 |
| GPL14550 | Agilent SurePrint G3 Human GE 8x60K Microarray | 2019-08-13 11:56:14.568730 | 26766 | 26759 | 19013 |
| Ontology Name | Last Update | Term Count |
|---|---|---|
| Adult Mouse Anatomy | 2020-09-22 | 3231 |
| Chemical Entities of Biological Interest | 2020-09-22 | 107006 |
| Disease Ontology | 2020-09-22 | 8235 |
| EMBRACE Data and Methods | 2020-09-22 | 2746 |
| Evidence and Conclusion Ontology | 2020-09-22 | 794 |
| Experimental Factor Ontology | 2020-09-22 | 8142 |
| Gene Ontology | 2020-09-22 | 46329 |
| Human Phenotype Ontology | 2020-09-22 | 12166 |
| JAX Mouse Strains | 2020-09-22 | 9834 |
| Mammalian Phenotype | 2020-09-22 | 13294 |
| Measurement Method Ontology | 2020-09-22 | 670 |
| Mesh Terms | 2020-09-22 | 26139 |
| Relation Ontology | 2020-09-22 | 559 |
| Uber Anatomy Ontology | 2020-09-22 | 13847 |
| Vertebrate Trait Ontology | 2020-09-22 | 3461 |
| Database Name | Species | Last Update | Genes per Species |
|---|---|---|---|
| Entrez | Mus musculus | 2020-05-05 | 51675 |
| Entrez | Homo sapiens | 2020-05-05 | 38045 |
| Entrez | Rattus norvegicus | 2020-05-05 | 44486 |
| Entrez | Danio rerio | 2020-05-05 | 26004 |
| Entrez | Drosophila melanogaster | 2020-05-05 | 25093 |
| Entrez | Macaca mulatta | 2020-05-05 | 33031 |
| Entrez | Caenorhabditis elegans | 2020-05-05 | 20014 |
| Entrez | Saccharomyces cerevisiae | 2020-05-05 | 6439 |
| Entrez | Gallus gallus | 2020-05-05 | 27666 |
| Entrez | Canis familiaris | 2020-05-05 | 36943 |
| Ensembl Gene | Mus musculus | 2020-05-05 | 55900 |
| Ensembl Gene | Homo sapiens | 2020-05-05 | 42520 |
| Ensembl Gene | Rattus norvegicus | 2020-05-05 | 21678 |
| Ensembl Gene | Danio rerio | 2020-05-05 | 27936 |
| Ensembl Gene | Gallus gallus | 2020-05-05 | 13534 |
| Ensembl Gene | Canis familiaris | 2020-05-05 | 17029 |
| Ensembl Transcript | Mus musculus | 2020-05-05 | 144246 |
| Unigene | Mus musculus | 2020-05-05 | 182508 |
| Unigene | Homo sapiens | 2020-05-05 | 282168 |
| Unigene | Rattus norvegicus | 2020-05-05 | 79206 |
| Unigene | Danio rerio | 2020-05-05 | 64877 |
| Unigene | Drosophila melanogaster | 2020-05-05 | 31201 |
| Unigene | Macaca mulatta | 2020-05-05 | 20105 |
| Unigene | Caenorhabditis elegans | 2020-05-05 | 32481 |
| Unigene | Gallus gallus | 2020-05-05 | 18134 |
| Unigene | Canis familiaris | 2020-05-05 | 21813 |
| Gene Symbol | Mus musculus | 2020-05-05 | 134664 |
| Gene Symbol | Homo sapiens | 2020-05-05 | 98905 |
| Gene Symbol | Rattus norvegicus | 2020-05-05 | 65709 |
| Gene Symbol | Danio rerio | 2020-05-05 | 161778 |
| Gene Symbol | Drosophila melanogaster | 2020-05-05 | 268925 |
| Gene Symbol | Macaca mulatta | 2020-05-05 | 20056 |
| Gene Symbol | Caenorhabditis elegans | 2020-05-05 | 47118 |
| Gene Symbol | Saccharomyces cerevisiae | 2020-05-05 | 16118 |
| Gene Symbol | Gallus gallus | 2020-05-05 | 35954 |
| Gene Symbol | Canis familiaris | 2020-05-05 | 37537 |
| MGI | Mus musculus | 2020-05-05 | 64973 |
| HGNC | Homo sapiens | 2020-05-05 | 38055 |
| RGD | Rattus norvegicus | 2020-05-05 | 56576 |
| ZFIN | Danio rerio | 2020-05-05 | 125252 |
| FlyBase | Drosophila melanogaster | 2020-05-05 | 185344 |
| Wormbase | Caenorhabditis elegans | 2020-05-05 | 46903 |
| SGD | Saccharomyces cerevisiae | 2020-05-05 | 8016 |
| miRBase | Mus musculus | 2020-05-05 | 1221 |
| miRBase | Homo sapiens | 2020-05-05 | 1854 |
| miRBase | Rattus norvegicus | 2020-05-05 | 496 |
| miRBase | Danio rerio | 2020-05-05 | 308 |
| miRBase | Drosophila melanogaster | 2020-05-05 | 258 |
| miRBase | Gallus gallus | 2020-05-05 | 738 |
| CGNC | Gallus gallus | 2020-05-05 | 28385 |
GeneWeaver