List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Height. The EFO term body height was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M He, M Xu, B Zhang, J Liang, P Chen, JY Lee, TA Johnson, H Li, X Yang, J Dai, L Liang, L Gui, Q Qi, J Huang, Y Li, LS Adair, T Aung, Q Cai, CY Cheng, MC Cho, YS Cho, M Chu, B Cui, YT Gao, MJ Go, D Gu, W Gu, H Guo, Y Hao, J Hong, Z Hu, Y Hu, J Huang, JY Hwang, MK Ikram, G Jin, DH Kang, CC Khor, BJ Kim, HT Kim, M Kubo, J Lee, J Lee, NR Lee, R Li, J Li, J Liu, J Longe, W Lu, X Lu, X Miao, Y Okada, RT Ong, G Qiu, M Seielstad, X Sim, H Song, F Takeuchi, T Tanaka, PR Taylor, L Wang, W Wang, Y Wang, C Wu, Y Wu, YB Xiang, K Yamamoto, H Yang, M Liao, M Yokota, T Young, X Zhang, N Kato, QK Wang, W Zheng, FB Hu, D Lin, H Shen, YY Teo, Z Mo, TY Wong, X Lin, KL Mohlke, G Ning, T Tsunoda, BG Han, XO Shu, ES Tai, T Wu, L Qi
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Body mass index. The EFO term body mass index was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
EK Speliotes, CJ Willer, SI Berndt, KL Monda, G Thorleifsson, AU Jackson, H Lango Allen, CM Lindgren, J Luan, R Mägi, JC Randall, S Vedantam, TW Winkler, L Qi, T Workalemahu, IM Heid, V Steinthorsdottir, HM Stringham, MN Weedon, E Wheeler, AR Wood, T Ferreira, RJ Weyant, AV Segrè, K Estrada, L Liang, J Nemesh, JH Park, S Gustafsson, TO Kilpeläinen, J Yang, N Bouatia-Naji, T Esko, MF Feitosa, Z Kutalik, M Mangino, S Raychaudhuri, A Scherag, AV Smith, R Welch, JH Zhao, KK Aben, DM Absher, N Amin, AL Dixon, E Fisher, NL Glazer, ME Goddard, NL Heard-Costa, V Hoesel, JJ Hottenga, A Johansson, T Johnson, S Ketkar, C Lamina, S Li, MF Moffatt, RH Myers, N Narisu, JR Perry, MJ Peters, M Preuss, S Ripatti, F Rivadeneira, C Sandholt, LJ Scott, NJ Timpson, JP Tyrer, S van Wingerden, RM Watanabe, CC White, F Wiklund, C Barlassina, DI Chasman, MN Cooper, JO Jansson, RW Lawrence, N Pellikka, I Prokopenko, J Shi, E Thiering, H Alavere, MT Alibrandi, P Almgren, AM Arnold, T Aspelund, LD Atwood, B Balkau, AJ Balmforth, AJ Bennett, Y Ben-Shlomo, RN Bergman, S Bergmann, H Biebermann, AI Blakemore, T Boes, LL Bonnycastle, SR Bornstein, MJ Brown, TA Buchanan, F Busonero, H Campbell, FP Cappuccio, C Cavalcanti-Proença, YD Chen, CM Chen, PS Chines, R Clarke, L Coin, J Connell, IN Day, M den Heijer, J Duan, S Ebrahim, P Elliott, R Elosua, G Eiriksdottir, MR Erdos, JG Eriksson, MF Facheris, SB Felix, P Fischer-Posovszky, AR Folsom, N Friedrich, NB Freimer, M Fu, S Gaget, PV Gejman, EJ Geus, C Gieger, AP Gjesing, A Goel, P Goyette, H Grallert, J Grässler, DM Greenawalt, CJ Groves, V Gudnason, C Guiducci, AL Hartikainen, N Hassanali, AS Hall, AS Havulinna, C Hayward, AC Heath, C Hengstenberg, AA Hicks, A Hinney, A Hofman, G Homuth, J Hui, W Igl, C Iribarren, B Isomaa, KB Jacobs, I Jarick, E Jewell, U John, T Jørgensen, P Jousilahti, A Jula, M Kaakinen, E Kajantie, LM Kaplan, S Kathiresan, J Kettunen, L Kinnunen, JW Knowles, I Kolcic, IR König, S Koskinen, P Kovacs, J Kuusisto, P Kraft, K Kvaløy, J Laitinen, O Lantieri, C Lanzani, LJ Launer, C Lecoeur, T Lehtimäki, G Lettre, J Liu, ML Lokki, M Lorentzon, RN Luben, B Ludwig, P Manunta, D Marek, M Marre, NG Martin, WL McArdle, A McCarthy, B McKnight, T Meitinger, O Melander, D Meyre, K Midthjell, GW Montgomery, MA Morken, AP Morris, R Mulic, JS Ngwa, M Nelis, MJ Neville, DR Nyholt, CJ O'Donnell, S O'Rahilly, KK Ong, B Oostra, G Paré, AN Parker, M Perola, I Pichler, KH Pietiläinen, CG Platou, O Polasek, A Pouta, S Rafelt, O Raitakari, NW Rayner, M Ridderstråle, W Rief, A Ruokonen, NR Robertson, P Rzehak, V Salomaa, AR Sanders, MS Sandhu, S Sanna, J Saramies, MJ Savolainen, S Scherag, S Schipf, S Schreiber, H Schunkert, K Silander, J Sinisalo, DS Siscovick, JH Smit, N Soranzo, U Sovio, J Stephens, I Surakka, AJ Swift, ML Tammesoo, JC Tardif, M Teder-Laving, TM Teslovich, JR Thompson, B Thomson, A Tönjes, T Tuomi, JB van Meurs, GJ van Ommen, V Vatin, J Viikari, S Visvikis-Siest, V Vitart, CI Vogel, BF Voight, LL Waite, H Wallaschofski, GB Walters, E Widen, S Wiegand, SH Wild, G Willemsen, DR Witte, JC Witteman, J Xu, Q Zhang, L Zgaga, A Ziegler, P Zitting, JP Beilby, IS Farooqi, J Hebebrand, HV Huikuri, AL James, M Kähönen, DF Levinson, F Macciardi, MS Nieminen, C Ohlsson, LJ Palmer, PM Ridker, M Stumvoll, JS Beckmann, H Boeing, E Boerwinkle, DI Boomsma, MJ Caulfield, SJ Chanock, FS Collins, LA Cupples, GD Smith, J Erdmann, P Froguel, H Grönberg, U Gyllensten, P Hall, T Hansen, TB Harris, AT Hattersley, RB Hayes, J Heinrich, FB Hu, K Hveem, T Illig, MR Jarvelin, J Kaprio, F Karpe, KT Khaw, LA Kiemeney, H Krude, M Laakso, DA Lawlor, A Metspalu, PB Munroe, WH Ouwehand, O Pedersen, BW Penninx, A Peters, PP Pramstaller, T Quertermous, T Reinehr, A Rissanen, I Rudan, NJ Samani, PE Schwarz, AR Shuldiner, TD Spector, J Tuomilehto, M Uda, A Uitterlinden, TT Valle, M Wabitsch, G Waeber, NJ Wareham, H Watkins, JF Wilson, AF Wright, MC Zillikens, N Chatterjee, SA McCarroll, S Purcell, EE Schadt, PM Visscher, TL Assimes, IB Borecki, P Deloukas, CS Fox, LC Groop, T Haritunians, DJ Hunter, RC Kaplan, KL Mohlke, JR O'Connell, L Peltonen, D Schlessinger, DP Strachan, CM van Duijn, HE Wichmann, TM Frayling, U Thorsteinsdottir, GR Abecasis, I Barroso, M Boehnke, K Stefansson, KE North, MI McCarthy, JN Hirschhorn, E Ingelsson, RJ Loos
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Height. The EFO term body height was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JJ Kim, HI Lee, T Park, K Kim, JE Lee, NH Cho, C Shin, YS Cho, JY Lee, BG Han, HW Yoo, JK Lee
Data from GEO GSE194368 and analyzed using GEO2R, only top gene shown. Authors identified transcriptional adaptations of GR signaling in the amygdala of humans with OUD. Thus, GRs, their coregulators and downstream systems may represent viable therapeutic targets to treat the “stress side” of OUD.
Authors:
Stephanie A Carmack, Janaina C M Vendruscolo, M Adrienne McGinn, Jorge Miranda-Barrientos, Vez Repunte-Canonigo, Gabriel D Bosse, Daniele Mercatelli, Federico M Giorgi, Yu Fu, Anthony J Hinrich, Francine M Jodelka, Karen Ling, Robert O Messing, Randall T Peterson, Frank Rigo, Scott Edwards, Pietro P Sanna, Marisela Morales, Michelle L Hastings, George F Koob, Leandro F Vendruscolo
Cerebellum Gene Expression Correlates for ACTI05_ETHA measured in BXD RI Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The ACTI05_ETHA measures Distance traveled (cm) during the first five minutes after ethanol under the domain Ethanol. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for ACTI15_ETHA measured in BXD RI Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The ACTI15_ETHA measures Distance traveled (cm) during the third five minute bin after ethanol under the domain Ethanol. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMDIST135 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMDIST135 measures Morphine distance (cm) travelled minutes 120-135 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMDIST90 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMDIST90 measures Morphine distance (cm) travelled minutes 75-90 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for MORPH_ACOUNT_2 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The MORPH_ACOUNT_2 measures Morphine Open Field TOTAL photocell counts under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for MORPH_ADIST_2 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The MORPH_ADIST_2 measures Morphine Open Field TOTAL distance (cm) travelled under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for ZM_ACTIVITY measured in BXD RI Females & Males obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The ZM_ACTIVITY measures Zero Maze - Total Activity count; number of beam breaks under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT105 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT105 measures Morphine photocell counts minutes 90-105 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT105 measured in BXD RI Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT105 measures Morphine photocell counts minutes 90-105 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT120 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT120 measures Morphine photocell counts minutes 105-120 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT120 measured in BXD RI Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT120 measures Morphine photocell counts minutes 105-120 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT135 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT135 measures Morphine photocell counts minutes 120-135 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for AMCNT135 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The AMCNT135 measures Morphine photocell counts minutes 120-135 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT90 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT90 measures Morphine photocell counts minutes 75-90 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMDIST105 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMDIST105 measures Morphine distance (cm) travelled minutes 90-105 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMDIST105 measured in BXD RI Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMDIST105 measures Morphine distance (cm) travelled minutes 90-105 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMDIST120 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMDIST120 measures Morphine distance (cm) travelled minutes 105-120 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
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