List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hepatocellular carcinoma. The EFO term hepatocellular carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
S Li, J Qian, Y Yang, W Zhao, J Dai, JX Bei, JN Foo, PJ McLaren, Z Li, J Yang, F Shen, L Liu, J Yang, S Li, S Pan, Y Wang, W Li, X Zhai, B Zhou, L Shi, X Chen, M Chu, Y Yan, J Wang, S Cheng, J Shen, W Jia, J Liu, J Yang, Z Wen, A Li, Y Zhang, G Zhang, X Luo, H Qin, M Chen, H Wang, L Jin, D Lin, H Shen, L He, PI de Bakker, H Wang, YX Zeng, M Wu, Z Hu, Y Shi, J Liu, W Zhou
GWAS: hepatocellular carcinoma, hepatitis B infection
Description:
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hepatocellular carcinoma in hepatitis B infection. The EFO term hepatocellular carcinoma, hepatitis B infection was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
LS Qu, F Jin, YM Guo, TT Liu, RY Xue, XW Huang, M Xu, TY Chen, ZP Ni, XZ Shen
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hepatocellular carcinoma. The EFO term hepatocellular carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
H Zhang, Y Zhai, Z Hu, C Wu, J Qian, W Jia, F Ma, W Huang, L Yu, W Yue, Z Wang, P Li, Y Zhang, R Liang, Z Wei, Y Cui, W Xie, M Cai, X Yu, Y Yuan, X Xia, X Zhang, H Yang, W Qiu, J Yang, F Gong, M Chen, H Shen, D Lin, YX Zeng, F He, G Zhou
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Chronic hepatitis C infection. The EFO term Chronic Hepatitis C infection was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
D Miki, H Ochi, CN Hayes, H Abe, T Yoshima, H Aikata, K Ikeda, H Kumada, J Toyota, T Morizono, T Tsunoda, M Kubo, Y Nakamura, N Kamatani, K Chayama
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hepatocellular carcinoma in hepatitis B infection. The EFO term hepatocellular carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
DK Jiang, J Sun, G Cao, Y Liu, D Lin, YZ Gao, WH Ren, XD Long, H Zhang, XP Ma, Z Wang, W Jiang, TY Chen, Y Gao, LD Sun, JR Long, HX Huang, D Wang, H Yu, P Zhang, LS Tang, B Peng, H Cai, TT Liu, P Zhou, F Liu, X Lin, S Tao, B Wan, HX Sai-Yin, LX Qin, J Yin, L Liu, C Wu, Y Pei, YF Zhou, Y Zhai, PX Lu, A Tan, XB Zuo, J Fan, J Chang, X Gu, NJ Wang, Y Li, YK Liu, K Zhai, H Zhang, Z Hu, J Liu, Q Yi, Y Xiang, R Shi, Q Ding, W Zheng, XO Shu, Z Mo, YY Shugart, XJ Zhang, G Zhou, H Shen, SL Zheng, J Xu, L Yu
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hepatocellular carcinoma. The EFO term hepatocellular carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
V Kumar, N Kato, Y Urabe, A Takahashi, R Muroyama, N Hosono, M Otsuka, R Tateishi, M Omata, H Nakagawa, K Koike, N Kamatani, M Kubo, Y Nakamura, K Matsuda
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hepatocellular carcinoma. The EFO term hepatocellular carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
RJ Clifford, J Zhang, DM Meerzaman, MS Lyu, Y Hu, CM Cultraro, RP Finney, JM Kelley, S Efroni, SI Greenblum, CV Nguyen, WL Rowe, S Sharma, G Wu, C Yan, H Zhang, YH Chung, JA Kim, NH Park, IH Song, KH Buetow
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hepatitis B (viral clearance). The EFO term hepatitis B infection was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
N Nishida, H Sawai, K Matsuura, M Sugiyama, SH Ahn, JY Park, S Hige, JH Kang, K Suzuki, M Kurosaki, Y Asahina, S Mochida, M Watanabe, E Tanaka, M Honda, S Kaneko, E Orito, Y Itoh, E Mita, A Tamori, Y Murawaki, Y Hiasa, I Sakaida, M Korenaga, K Hino, T Ide, M Kawashima, Y Mawatari, M Sageshima, Y Ogasawara, A Koike, N Izumi, KH Han, Y Tanaka, K Tokunaga, M Mizokami
Hippocampus Gene Expression Correlates for TAILWITHDRAWALLATENCYMEAN measured in BXD RI Males obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The TAILWITHDRAWALLATENCYMEAN measures Thermal Nociception Tail Withdrawal Test under the domain Pain. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for ROTATRAIN_DIFF measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The ROTATRAIN_DIFF measures Difference in time on rotarod between training and saline under the domain Ethanol. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Whole Brain Gene Expression Correlates for MDMA_ACT_MDA_1 measured in BXD RI Males obtained using INIA Brain mRNA M430 (Jun06) RMA. The MDMA_ACT_MDA_1 measures Locomotor response of 10 mg/kg MDMA injected on Day 2 under the domain MDMA. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for VOCA_THRESHOLD measured in BXD RI Females & Males obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The VOCA_THRESHOLD measures Vocalization Threshold - shock intensity (mA) under the domain Stress Vocalization. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Neocortex Gene Expression Correlates for ZM_TCLOSED measured in BXD RI Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The ZM_TCLOSED measures Zero Maze - Time in Closed Arms under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Neocortex Gene Expression Correlates for ZM_TOPEN measured in BXD RI Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The ZM_TOPEN measures Zero Maze - total time in open quadrants under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Genes associated with Homo sapiens that interact with the MeSH term 'Vitamin K 3' (D024483). Incorporates data from 82 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term '2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine' (C049584). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
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