Transcriptomic analysis of gene expression in the nucleus accumbens somatostatin interneurons of male 8�12-week-old Sst-Cre mice or Sst-Cre x TLG498 (SST-TLG498) mice following repeated cocaine intake. Expression was measured via RNA-seq. Values presented are p-values. Data taken from Supplementary Data 1. Data can be accessed at GEO with accession number: GSE116484.A7
Authors:
Efrain A Ribeiro, Marine Salery, Joseph R Scarpa, Erin S Calipari, Peter J Hamilton, Stacy M Ku, Hope Kronman, Immanuel Purushothaman, Barbara Juarez, Mitra Heshmati, Marie Doyle, Casey Lardner, Dominicka Burek, Ana Strat, Stephen Pirpinias, Ezekiell Mouzon, Ming-Hu Han, Rachael L Neve, Rosemary C Bagot, Andrew Kasarskis, Ja Wook Koo, Eric J Nestler
640 Diversity Outbred (DO) mice were exposed to 4 weeks of intermittent ethanol access (IEA) via 3-bottle choice (H20, 15% EtOH, 30% EtOH). 200 prefrontal cortex (PFC) samples were sent for RNA-seq. After QC and GBRS alignment, Pearson correlations were calculated for all genes with variant-stabilized transcript counts >1 and whole study mean ethanol consumption. This gene set provides the list of genes for which FDR-corrected p-values < 0.05 and their Pearson correlation scores.
640 Diversity Outbred (DO) mice were exposed to 4 weeks of intermittent ethanol access (IEA) via 3-bottle choice (H20, 15% EtOH, 30% EtOH). 200 prefrontal cortex (PFC) samples were sent for RNA-seq. After QC and GBRS alignment, Pearson correlations were calculated for all genes with variant-stabilized transcript counts >1 and week 1 mean ethanol consumption. This gene set provides the list of genes for which FDR-corrected p-values < 0.05 and their Pearson correlation scores.
640 Diversity Outbred (DO) mice were exposed to 4 weeks of intermittent ethanol access (IEA) via 3-bottle choice (H20, 15% EtOH, 30% EtOH). 200 prefrontal cortex (PFC) samples were sent for RNA-seq. After QC and GBRS alignment, Pearson correlations were calculated for all genes with variant-stabilized transcript counts >1 and week four mean ethanol consumption. This gene set provides the list of genes for which FDR-corrected p-values < 0.05 and their Pearson correlation scores.
640 Diversity Outbred (DO) mice were exposed to 4 weeks of intermittent ethanol access (IEA) via 3-bottle choice (H20, 15% EtOH, 30% EtOH). 200 prefrontal cortex (PFC) samples were sent for RNA-seq. After QC and GBRS alignment, Pearson correlations were calculated for all genes with variant-stabilized transcript counts >1 and whole study mean ethanol preference over water. This gene set provides the list of genes for which FDR-corrected p-values < 0.05 and their Pearson correlation scores.
640 Diversity Outbred (DO) mice were exposed to 4 weeks of intermittent ethanol access (IEA) via 3-bottle choice (H20, 15% EtOH, 30% EtOH). 200 prefrontal cortex (PFC) samples were sent for RNA-seq. After QC and GBRS alignment, Pearson correlations were calculated for all genes with variant-stabilized transcript counts >1 and week four mean ethanol preference over water. This gene set provides the list of genes for which FDR-corrected p-values < 0.05 and their Pearson correlation scores.
Genes identified as expressed lower (down) in the AJ strain than in the NOD strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the AJ strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed lower (down) in the AJ strain than in the CAST strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the NZO strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed lower (down) in the AJ strain than in the NOD strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed lower (down) in the AJ strain than in the NZO strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed lower (down) in the AJ strain than in the S129 strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the AJ strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the WSB strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed lower (down) in the AJ strain than in the CAST strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the AJ strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the NOD strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the NZO strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the NZO strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the S129 strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
Genes identified as expressed higher (up) in the AJ strain than in the WSB strain. Differentially expressed genes had a Q-value < 0.05 following the Benjamini-Hochberg methodology for false discovery rates in the limma+voom pipeline within edgeR. Q-value is reported from the topTable function.
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