List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Chronic lymphocytic leukemia. The EFO term chronic lymphocytic leukemia was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
SI Berndt, NJ Camp, CF Skibola, J Vijai, Z Wang, J Gu, A Nieters, RS Kelly, KE Smedby, A Monnereau, W Cozen, A Cox, SS Wang, Q Lan, LR Teras, M Machado, M Yeager, AR Brooks-Wilson, P Hartge, MP Purdue, BM Birmann, CM Vajdic, P Cocco, Y Zhang, GG Giles, A Zeleniuch-Jacquotte, C Lawrence, R Montalvan, L Burdett, A Hutchinson, Y Ye, TG Call, TD Shanafelt, AJ Novak, NE Kay, M Liebow, JM Cunningham, C Allmer, H Hjalgrim, HO Adami, M Melbye, B Glimelius, ET Chang, M Glenn, K Curtin, LA Cannon-Albright, WR Diver, BK Link, GJ Weiner, L Conde, PM Bracci, J Riby, DK Arnett, D Zhi, JM Leach, EA Holly, RD Jackson, LF Tinker, Y Benavente, N Sala, D Casabonne, N Becker, P Boffetta, P Brennan, L Foretova, M Maynadie, J McKay, A Staines, KG Chaffee, SJ Achenbach, CM Vachon, LR Goldin, SS Strom, JF Leis, JB Weinberg, NE Caporaso, AD Norman, AJ De Roos, LM Morton, RK Severson, E Riboli, P Vineis, R Kaaks, G Masala, E Weiderpass, MD Chirlaque, RC Vermeulen, RC Travis, MC Southey, RL Milne, D Albanes, J Virtamo, S Weinstein, J Clavel, T Zheng, TR Holford, DJ Villano, A Maria, JJ Spinelli, RD Gascoyne, JM Connors, KA Bertrand, E Giovannucci, P Kraft, A Kricker, J Turner, MG Ennas, GM Ferri, L Miligi, L Liang, B Ma, J Huang, S Crouch, JH Park, N Chatterjee, KE North, JA Snowden, J Wright, JF Fraumeni, K Offit, X Wu, S de Sanjose, JR Cerhan, SJ Chanock, N Rothman, SL Slager
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hodgkin's lymphoma. The EFO term Hodgkins lymphoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Frampton, MI da Silva Filho, P Broderick, H Thomsen, A Försti, J Vijayakrishnan, R Cooke, V Enciso-Mora, P Hoffmann, MM Nöthen, A Lloyd, A Holroyd, L Eisele, KH Jöckel, S Ponader, EP von Strandmann, T Lightfoot, E Roman, A Lake, D Montgomery, RF Jarrett, AJ Swerdlow, A Engert, K Hemminki, RS Houlston
Positional candidate genes for VONFREYTHRESHOLDMEAN in BXD RI Females & Males on Chr9
Description:
Position candidates for VONFREYTHRESHOLDMEAN measured in BXD RI Females & Males. VONFREYTHRESHOLDMEAN measures Mechanical Sensitivity-Von Frey Threshold under the domain Pain. The QTL found was a Suggestive QTL and spans 114 Mb to 120 Mb.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for HP_LATENCY measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The HP_LATENCY measures Thermal Nociception Hot Plate Latency under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for COCA_TEST_DRUG measured in BXD RI Females obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The COCA_TEST_DRUG measures Cocaine CPP- Time (s) in drug-paired compartment a under the domain Cocaine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for SPD_TIMEDOWELBSEC measured in BXD RI Females & Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The SPD_TIMEDOWELBSEC measures Dowel Test - Time B Sec under the domain Porsolt. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for SPD_TIMEDOWELBSEC measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The SPD_TIMEDOWELBSEC measures Dowel Test - Time B Sec under the domain Porsolt. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
cocaine related behavior 10 (Cocrb10) spans 93.149752 - 143.149752 Mbp (NCBI Build 37) on Chr 9. Obtained from MGI (http://www.informatics.jax.org) by searching for QTLs containing the keyword .
QTL for differences in cocaine responsiveness on Chr9 at D9M!t12 (94.40 Mbp , Build 37)
Description:
differences in cocaine responsiveness spans 69.40 - 119.40 Mbp (NCBI Build 37) on Chr9. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for METH responses for body temperature on Chr9 at D9Mit12 (103.09 Mbp , Build 37)
Description:
METH responses for body temperature spans 78.09 - 128.09 Mbp (NCBI Build 37) on Chr9. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
alcohol response 4 (a.k.a. high-dose ethanol actions) is associated with neurotensin immunoreactivity and sleep time after alcohol administration mapped to 55 cM on mouse Chromosome 9 near D9Mit12 (P=0.0006). This locus is named Alcrsp4 (alcohol response 4). Potential candidate genes found in this region are Chrna3 and Gnai2. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Authors:
Erwin VG, Markel PD, Johnson TE, Gehle VM, Jones BC
QTL for differences in cocaine responsiveness on Chr9 at D9MIt2O (105.59 Mbp , Build 37)
Description:
differences in cocaine responsiveness spans 80.59 - 130.59 Mbp (NCBI Build 37) on Chr9. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for cocaine seizure on Chr9 at D9Mit51 (111.26 Mbp , Build 37)
Description:
cocaine seizure spans 86.26 - 136.26 Mbp (NCBI Build 37) on Chr9. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
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