List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Smoking behavior. The EFO term smoking behavior was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
SP David, A Hamidovic, GK Chen, AW Bergen, J Wessel, JL Kasberger, WM Brown, S Petruzella, EL Thacker, Y Kim, MA Nalls, GJ Tranah, YJ Sung, CB Ambrosone, D Arnett, EV Bandera, DM Becker, L Becker, SI Berndt, L Bernstein, WJ Blot, U Broeckel, SG Buxbaum, N Caporaso, G Casey, SJ Chanock, SL Deming, WR Diver, CB Eaton, DS Evans, MK Evans, M Fornage, N Franceschini, TB Harris, BE Henderson, DG Hernandez, B Hitsman, JJ Hu, SC Hunt, SA Ingles, EM John, R Kittles, S Kolb, LN Kolonel, L Le Marchand, Y Liu, KK Lohman, B McKnight, RC Millikan, A Murphy, C Neslund-Dudas, S Nyante, M Press, BM Psaty, DC Rao, S Redline, JL Rodriguez-Gil, BA Rybicki, LB Signorello, AB Singleton, J Smoller, B Snively, B Spring, JL Stanford, SS Strom, GE Swan, KD Taylor, MJ Thun, AF Wilson, JS Witte, Y Yamamura, LR Yanek, K Yu, W Zheng, RG Ziegler, AB Zonderman, E Jorgenson, CA Haiman, H Furberg
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Lung cancer. The EFO term lung carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
RJ Hung, JD McKay, V Gaborieau, P Boffetta, M Hashibe, D Zaridze, A Mukeria, N Szeszenia-Dabrowska, J Lissowska, P Rudnai, E Fabianova, D Mates, V Bencko, L Foretova, V Janout, C Chen, G Goodman, JK Field, T Liloglou, G Xinarianos, A Cassidy, J McLaughlin, G Liu, S Narod, HE Krokan, F Skorpen, MB Elvestad, K Hveem, L Vatten, J Linseisen, F Clavel-Chapelon, P Vineis, HB Bueno-de-Mesquita, E Lund, C Martinez, S Bingham, T Rasmuson, P Hainaut, E Riboli, W Ahrens, S Benhamou, P Lagiou, D Trichopoulos, I Holcátová, F Merletti, K Kjaerheim, A Agudo, G Macfarlane, R Talamini, L Simonato, R Lowry, DI Conway, A Znaor, C Healy, D Zelenika, A Boland, M Delepine, M Foglio, D Lechner, F Matsuda, H Blanche, I Gut, S Heath, M Lathrop, P Brennan
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Smoking behavior. The EFO term smoking behavior was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JZ Liu, F Tozzi, DM Waterworth, SG Pillai, P Muglia, L Middleton, W Berrettini, CW Knouff, X Yuan, G Waeber, P Vollenweider, M Preisig, NJ Wareham, JH Zhao, RJ Loos, I Barroso, KT Khaw, S Grundy, P Barter, R Mahley, A Kesaniemi, R McPherson, JB Vincent, J Strauss, JL Kennedy, A Farmer, P McGuffin, R Day, K Matthews, P Bakke, A Gulsvik, S Lucae, M Ising, T Brueckl, S Horstmann, HE Wichmann, R Rawal, N Dahmen, C Lamina, O Polasek, L Zgaga, J Huffman, S Campbell, J Kooner, JC Chambers, MS Burnett, JM Devaney, AD Pichard, KM Kent, L Satler, JM Lindsay, R Waksman, S Epstein, JF Wilson, SH Wild, H Campbell, V Vitart, MP Reilly, M Li, L Qu, R Wilensky, W Matthai, HH Hakonarson, DJ Rader, A Franke, M Wittig, A Schäfer, M Uda, A Terracciano, X Xiao, F Busonero, P Scheet, D Schlessinger, D St Clair, D Rujescu, GR Abecasis, HJ Grabe, A Teumer, H Völzke, A Petersmann, U John, I Rudan, C Hayward, AF Wright, I Kolcic, BJ Wright, JR Thompson, AJ Balmforth, AS Hall, NJ Samani, CA Anderson, T Ahmad, CG Mathew, M Parkes, J Satsangi, M Caulfield, PB Munroe, M Farrall, A Dominiczak, J Worthington, W Thomson, S Eyre, A Barton, V Mooser, C Francks, J Marchini
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Exhaled carbon monoxide levels. The EFO term smoking behavior, carbon monoxide exhalation measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
AJ Bloom, SM Hartz, TB Baker, LS Chen, ME Piper, L Fox, M Martinez, D Hatsukami, EO Johnson, CC Laurie, NL Saccone, A Goate, LJ Bierut
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Airflow obstruction. The EFO term pulmonary function measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JB Wilk, NR Shrine, LR Loehr, JH Zhao, A Manichaikul, LM Lopez, AV Smith, SR Heckbert, J Smolonska, W Tang, DW Loth, I Curjuric, J Hui, MH Cho, JC Latourelle, AP Henry, M Aldrich, P Bakke, TH Beaty, AR Bentley, IB Borecki, GG Brusselle, KM Burkart, TH Chen, D Couper, JD Crapo, G Davies, J Dupuis, N Franceschini, A Gulsvik, DB Hancock, TB Harris, A Hofman, M Imboden, AL James, KT Khaw, L Lahousse, LJ Launer, A Litonjua, Y Liu, KK Lohman, DA Lomas, T Lumley, KD Marciante, WL McArdle, B Meibohm, AC Morrison, AW Musk, RH Myers, KE North, DS Postma, BM Psaty, SS Rich, F Rivadeneira, T Rochat, JI Rotter, M Soler Artigas, JM Starr, AG Uitterlinden, NJ Wareham, C Wijmenga, P Zanen, MA Province, EK Silverman, IJ Deary, LJ Palmer, PA Cassano, V Gudnason, RG Barr, RJ Loos, DP Strachan, SJ London, HM Boezen, N Probst-Hensch, SA Gharib, IP Hall, GT O'Connor, MD Tobin, BH Stricker
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Lung cancer. The EFO term lung carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
P Liu, HG Vikis, D Wang, Y Lu, Y Wang, AG Schwartz, SM Pinney, P Yang, M de Andrade, GM Petersen, JS Wiest, PR Fain, A Gazdar, C Gaba, H Rothschild, D Mandal, T Coons, J Lee, E Kupert, D Seminara, J Minna, JE Bailey-Wilson, X Wu, MR Spitz, T Eisen, RS Houlston, CI Amos, MW Anderson, M You
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Lung cancer. The EFO term lung carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
CI Amos, X Wu, P Broderick, IP Gorlov, J Gu, T Eisen, Q Dong, Q Zhang, X Gu, J Vijayakrishnan, K Sullivan, A Matakidou, Y Wang, G Mills, K Doheny, YY Tsai, WV Chen, S Shete, MR Spitz, RS Houlston
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Chronic obstructive pulmonary disease. The EFO term chronic obstructive pulmonary disease was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
MH Cho, PJ Castaldi, ES Wan, M Siedlinski, CP Hersh, DL Demeo, BE Himes, JS Sylvia, BJ Klanderman, JP Ziniti, C Lange, AA Litonjua, D Sparrow, EA Regan, BJ Make, JE Hokanson, T Murray, JB Hetmanski, SG Pillai, X Kong, WH Anderson, R Tal-Singer, DA Lomas, HO Coxson, LD Edwards, W MacNee, J Vestbo, JC Yates, A Agusti, PM Calverley, B Celli, C Crim, S Rennard, E Wouters, P Bakke, A Gulsvik, JD Crapo, TH Beaty, EK Silverman
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Smoking cessation in chronic obstructive pulmonary disease. The EFO term chronic obstructive pulmonary disease, smoking cessation was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Siedlinski, MH Cho, P Bakke, A Gulsvik, DA Lomas, W Anderson, X Kong, SI Rennard, TH Beaty, JE Hokanson, JD Crapo, EK Silverman
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Current cigarettes per day in chronic obstructive pulmonary disease. The EFO term chronic obstructive pulmonary disease, smoking behaviour measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Siedlinski, MH Cho, P Bakke, A Gulsvik, DA Lomas, W Anderson, X Kong, SI Rennard, TH Beaty, JE Hokanson, JD Crapo, EK Silverman
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Age at smoking initiation in chronic obstructive pulmonary disease. The EFO term chronic obstructive pulmonary disease, smoking initiation was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Siedlinski, MH Cho, P Bakke, A Gulsvik, DA Lomas, W Anderson, X Kong, SI Rennard, TH Beaty, JE Hokanson, JD Crapo, EK Silverman
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Smoking behavior. The EFO term smoking behavior was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
N Caporaso, F Gu, N Chatterjee, J Sheng-Chih, K Yu, M Yeager, C Chen, K Jacobs, W Wheeler, MT Landi, RG Ziegler, DJ Hunter, S Chanock, S Hankinson, P Kraft, AW Bergen
This gene set comprises 239 genes that are differentially expressed within each of five brain regions (amygdala, hippocampus, nucleus accumbens, prefrontal cortex and ventral tegmental area) when chronic nicotine treatment is administered to C57BL/6J mice only. Background: Studies involving use of chronic nicotine treatment identify unique nicotine addiction genes and the biological processes they control in B6 and C3 mice. Results are obtained using gene expression profiling and gene ontology.
Authors:
Wang J, Gutala R, Hwang YY, Kim JM, Konu O, Ma JZ, Li MD
Hippocampus Gene Expression Correlates for VONFREYTHRESHOLDMEAN measured in BXD RI Females & Males obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The VONFREYTHRESHOLDMEAN measures Mechanical Sensitivity-Von Frey Threshold under the domain Pain. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for NEPVCOUNT45 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The NEPVCOUNT45 measures Novel environment rears 30-45 min in the periphery under the domain Cocaine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for NEVCOUNT15 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The NEVCOUNT15 measures Novel environment vertical activity counts min 0-15 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for OF_CORNER_TIME_PCT measured in BXD RI Females obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The OF_CORNER_TIME_PCT measures Open Field - Total time in corners under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for OF_CORNER_TIME_PCT measured in BXD RI Females obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The OF_CORNER_TIME_PCT measures Open Field - Total time in corners under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Cerebellum Gene Expression Correlates for ST_MAX_120 measured in BXD RI Females obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The ST_MAX_120 measures Maximum startle to 120 db under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for AMCNT120 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The AMCNT120 measures Morphine photocell counts minutes 105-120 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for AMCNT135 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The AMCNT135 measures Morphine photocell counts minutes 120-135 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for AMCNT15 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The AMCNT15 measures Morphine photocell counts minutes 0-15 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for AMDIST120 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The AMDIST120 measures Morphine distance (cm) travelled minutes 105-120 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Whole Brain Gene Expression Correlates for PTOSIS measured in BXD RI Females & Males obtained using INIA Brain mRNA M430 (Jun06) RMA. The PTOSIS measures Morphine - Severity of ptosis under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
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