GeneSet Information

Tier I GS267967 • GWAS Catalog Data for smoking behavior in Up to 32,389 African American individuals

DESCRIPTION:

List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Smoking behavior. The EFO term smoking behavior was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.

LABEL:

GWAS: smoking behavior

SCORE TYPE:

P-Value

DATE ADDED:

2017-05-02

DATE UPDATED:

2019-01-07

SPECIES:

AUTHORS:

SP David, A Hamidovic, GK Chen, AW Bergen, J Wessel, JL Kasberger, WM Brown, S Petruzella, EL Thacker, Y Kim, MA Nalls, GJ Tranah, YJ Sung, CB Ambrosone, D Arnett, EV Bandera, DM Becker, L Becker, SI Berndt, L Bernstein, WJ Blot, U Broeckel, SG Buxbaum, N Caporaso, G Casey, SJ Chanock, SL Deming, WR Diver, CB Eaton, DS Evans, MK Evans, M Fornage, N Franceschini, TB Harris, BE Henderson, DG Hernandez, B Hitsman, JJ Hu, SC Hunt, SA Ingles, EM John, R Kittles, S Kolb, LN Kolonel, L Le Marchand, Y Liu, KK Lohman, B McKnight, RC Millikan, A Murphy, C Neslund-Dudas, S Nyante, M Press, BM Psaty, DC Rao, S Redline, JL Rodriguez-Gil, BA Rybicki, LB Signorello, AB Singleton, J Smoller, B Snively, B Spring, JL Stanford, SS Strom, GE Swan, KD Taylor, MJ Thun, AF Wilson, JS Witte, Y Yamamura, LR Yanek, K Yu, W Zheng, RG Ziegler, AB Zonderman, E Jorgenson, CA Haiman, H Furberg

TITLE:

Genome-wide meta-analyses of smoking behaviors in African Americans.

JOURNAL:

Translational psychiatry May 2012, Vol 2, pp. e119

ABSTRACT:

The identification and exploration of genetic loci that influence smoking behaviors have been conducted primarily in populations of the European ancestry. Here we report results of the first genome-wide association study meta-analysis of smoking behavior in African Americans in the Study of Tobacco in Minority Populations Genetics Consortium (n = 32,389). We identified one non-coding single-nucleotide polymorphism (SNP; rs2036527[A]) on chromosome 15q25.1 associated with smoking quantity (cigarettes per day), which exceeded genome-wide significance (β = 0.040, s.e. = 0.007, P = 1.84 × 10(-8)). This variant is present in the 5'-distal enhancer region of the CHRNA5 gene and defines the primary index signal reported in studies of the European ancestry. No other SNP reached genome-wide significance for smoking initiation (SI, ever vs never smoking), age of SI, or smoking cessation (SC, former vs current smoking). Informative associations that approached genome-wide significance included three modestly correlated variants, at 15q25.1 within PSMA4, CHRNA5 and CHRNA3 for smoking quantity, which are associated with a second signal previously reported in studies in European ancestry populations, and a signal represented by three SNPs in the SPOCK2 gene on chr10q22.1. The association at 15q25.1 confirms this region as an important susceptibility locus for smoking quantity in men and women of African ancestry. Larger studies will be needed to validate the suggestive loci that did not reach genome-wide significance and further elucidate the contribution of genetic variation to disparities in cigarette consumption, SC and smoking-attributable disease between African Americans and European Americans. PUBMED: 22832964
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Annotation Information



smoking behavior (EFO:0004318)

Gene List • 5 Genes

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