List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Asthma (childhood onset). The EFO term childhood onset asthma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
K Bønnelykke, P Sleiman, K Nielsen, E Kreiner-Møller, JM Mercader, D Belgrave, HT den Dekker, A Husby, A Sevelsted, G Faura-Tellez, LJ Mortensen, L Paternoster, R Flaaten, A Mølgaard, DE Smart, PF Thomsen, MA Rasmussen, S Bonà s-Guarch, C Holst, EA Nohr, R Yadav, ME March, T Blicher, PM Lackie, VW Jaddoe, A Simpson, JW Holloway, L Duijts, A Custovic, DE Davies, D Torrents, R Gupta, MV Hollegaard, DM Hougaard, H Hakonarson, H Bisgaard
QTL for ethanol withdrawal on Chr12 at D12Ncvs38 (14.25 Mbp , Build 37)
Description:
ethanol withdrawal spans 0.00 - 39.25 Mbp (NCBI Build 37) on Chr12. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for differences in cocaine responsiveness on Chr12 at D12M!t2 (39.51 Mbp , Build 37)
Description:
differences in cocaine responsiveness spans 14.51 - 64.51 Mbp (NCBI Build 37) on Chr12. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for METH responses for body temperature on Chr12 at Mox2 (45.22 Mbp , Build 37)
Description:
METH responses for body temperature spans 20.22 - 70.22 Mbp (NCBI Build 37) on Chr12. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for cocaine induced activation on Chr12 at D12Xrf564 (55.38 Mbp , Build 37)
Description:
cocaine induced activation spans 30.38 - 80.38 Mbp (NCBI Build 37) on Chr12. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Genes associated with Homo sapiens that interact with the MeSH term 'Benzo(a)pyrene' (D001564). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Average rotarod training latency Chr# 12 rs13481614 (102385663) with right flanking marker rs33846822 (30605487) and left marker rs29187760 (115166913). This was mapped in 300 + (b6x129)F2 mice.
QTL associated with atherosclerotic lesion area 5. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (14353654)
QTL associated with atherosclerotic lesion area 6. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (55072816)
QTL associated with Avp transcript abundance QTL 2. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (30858603)
QTL associated with circadian photosensitivity 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (16387032)
Authors:
Yoshimura T, Yokota Y, Ishikawa A, Yasuo S, Hayashi N, Suzuki T, Okabayashi N, Namikawa T, Ebihara S
QTL associated with circadian period of locomotor activity 10. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (36628031)
Authors:
Hofstetter JR, Trofatter JA, Kernek KL, Nurnberger JI, Mayeda AR
QTL associated with experimental allergic encephalomyelitis susceptibility 16. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (25358024)
QTL associated with fluctuating asymmetry QTL 5. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (27750456)
Authors:
Zhang S, Lou Y, Amstein TM, Anyango M, Mohibullah N, Osoti A, Stancliffe D, King R, Iraqi F, Gershenfeld HK
QTL associated with femoral cross-sectional area 7. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (27125870)
Authors:
Klein RF, Turner RJ, Skinner LD, Vartanian KA, Serang M, Carlos AS, Shea M, Belknap JK, Orwoll ES
QTL associated with free running period 3. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (46217345)
Authors:
Shimomura K, Low-Zeddies SS, King DP, Steeves TD, Whiteley A, Kushla J, Zemenides PD, Lin A, Vitaterna MH, Churchill GA, Takahashi JS
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