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List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Infantile hypertrophic pyloric stenosis. The EFO term infantile hypertrophic pyloric stenosis was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
B Feenstra, F Geller, C Krogh, MV Hollegaard, S Gørtz, HA Boyd, JC Murray, DM Hougaard, M Melbye
QTL associated with skin tumor susceptibility 5. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (39825454)
Rats in separate cage with free choice of water or 10% (v/v) of ethanol; consumption scores (grams/kg/day) were averaged; the amounts of ethanol consumed every 3 days over three weeks. Additive QTL. Variance 2, LOD 2.4 Peak Marker: D10Mgh25 spans D10Mgh25(5090008) - D10Mgh182(17515458). Strains were HAD1, LAD1, HAD2 , LAD2
Authors:
Foroud T, Bice P, Castelluccio P, Bo R, Miller L, Ritchotte A, Lumeng L, Li TK, Carr LG
QTL associated with experimental allergic encephalomyelitis susceptibility 5. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (41438808)
Authors:
Teuscher C, Doerge RW, Fillmore PD, Blankenhorn EP
Intracellular receptors that bind to INOSITOL 1,4,5-TRISPHOSPHATE and play an important role in its intracellular signaling. Inositol 1,4,5-trisphosphate receptors are calcium channels that release CALCIUM in response to increased levels of inositol 1,4,5-trisphosphate in the CYTOPLASM.
Generated by gene2mesh v. 1.1.1
Genes that have enhancers which have changes in chromatin structure to state 4 or 5 in response to cocaine in adult (8-10 week) male C57BL/6J mice. 5hmC levels were measured via 5hmC-seq. Data taken from Supplementary Table 3. Values presented are "1" for presence. Data available at GEO with accession number GSE63749.
The large, submetacentric human chromosomes, called group B in the human chromosome classification. This group consists of chromosome pairs 4 and 5.
Generated by gene2mesh v. 1.1.1
Genes with particular expression in the Gustatory areas, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Anterolateral visual area, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Primary motor area, Layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Agranular insular area, ventral part, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Primary somatosensory area, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Agranular insular area, dorsal part, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "RNA biosynthetic process", which is defined as "The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. Refers not only to transcription but also to e.g. viral RNA replication." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.12.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "RNA metabolic process", which is defined as "The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.12.
Authors:
M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
Genes with particular expression in the Agranular insular area, posterior part, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Primary somatosensory area, upper limb, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Posterior parietal association areas, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Primary somatosensory area, nose, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Secondary motor area, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Retrosplenial area, lateral agranular part, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Primary somatosensory area, mouth, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Primary somatosensory area, barrel field, layer 5. Data represent fold expression difference in structure versus grey matter average expression.
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