List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Axial length. The EFO term axial length measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
CY Cheng, M Schache, MK Ikram, TL Young, JA Guggenheim, V Vitart, S MacGregor, VJ Verhoeven, VA Barathi, J Liao, PG Hysi, JE Bailey-Wilson, B St Pourcain, JP Kemp, G McMahon, NJ Timpson, DM Evans, GW Montgomery, A Mishra, YX Wang, JJ Wang, E Rochtchina, O Polasek, AF Wright, N Amin, EM van Leeuwen, JF Wilson, CE Pennell, CM van Duijn, PT de Jong, JR Vingerling, X Zhou, P Chen, R Li, WT Tay, Y Zheng, M Chew, KP Burdon, JE Craig, SK Iyengar, RP Igo, JH Lass, EY Chew, T Haller, E Mihailov, A Metspalu, J Wedenoja, CL Simpson, R Wojciechowski, R Höhn, A Mirshahi, T Zeller, N Pfeiffer, KJ Lackner, T Bettecken, T Meitinger, K Oexle, M Pirastu, L Portas, A Nag, KM Williams, E Yonova-Doing, R Klein, BE Klein, SM Hosseini, AD Paterson, KM Makela, T Lehtimaki, M Kahonen, O Raitakari, N Yoshimura, F Matsuda, LJ Chen, CP Pang, SP Yip, MK Yap, A Meguro, N Mizuki, H Inoko, PJ Foster, JH Zhao, E Vithana, ES Tai, Q Fan, L Xu, H Campbell, B Fleck, I Rudan, T Aung, A Hofman, AG Uitterlinden, G Bencic, CC Khor, H Forward, O Pärssinen, P Mitchell, F Rivadeneira, AW Hewitt, C Williams, BA Oostra, YY Teo, CJ Hammond, D Stambolian, DA Mackey, CC Klaver, TY Wong, SM Saw, PN Baird
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Periodontal disease-related phenotypes. The EFO term periodontitis was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JR Shaffer, DE Polk, X Wang, E Feingold, DE Weeks, MK Lee, KT Cuenco, RJ Weyant, RJ Crout, DW McNeil, ML Marazita
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Refractive error. The EFO term Abnormality of refraction was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
VJ Verhoeven, PG Hysi, R Wojciechowski, Q Fan, JA Guggenheim, R Höhn, S MacGregor, AW Hewitt, A Nag, CY Cheng, E Yonova-Doing, X Zhou, MK Ikram, GH Buitendijk, G McMahon, JP Kemp, BS Pourcain, CL Simpson, KM Mäkelä, T Lehtimäki, M Kähönen, AD Paterson, SM Hosseini, HS Wong, L Xu, JB Jonas, O Pärssinen, J Wedenoja, SP Yip, DW Ho, CP Pang, LJ Chen, KP Burdon, JE Craig, BE Klein, R Klein, T Haller, A Metspalu, CC Khor, ES Tai, T Aung, E Vithana, WT Tay, VA Barathi, P Chen, R Li, J Liao, Y Zheng, RT Ong, A Döring, DM Evans, NJ Timpson, AJ Verkerk, T Meitinger, O Raitakari, F Hawthorne, TD Spector, LC Karssen, M Pirastu, F Murgia, W Ang, A Mishra, GW Montgomery, CE Pennell, PM Cumberland, I Cotlarciuc, P Mitchell, JJ Wang, M Schache, S Janmahasatian, S Janmahasathian, RP Igo, JH Lass, E Chew, SK Iyengar, TG Gorgels, I Rudan, C Hayward, AF Wright, O Polasek, Z Vatavuk, JF Wilson, B Fleck, T Zeller, A Mirshahi, C Müller, AG Uitterlinden, F Rivadeneira, JR Vingerling, A Hofman, BA Oostra, N Amin, AA Bergen, YY Teo, JS Rahi, V Vitart, C Williams, PN Baird, TY Wong, K Oexle, N Pfeiffer, DA Mackey, TL Young, CM van Duijn, SM Saw, JE Bailey-Wilson, D Stambolian, CC Klaver, CJ Hammond
Neocortex Gene Expression Correlates for HAND_4HOURS measured in BXD RI Females & Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The HAND_4HOURS measures Handling induced convulsions 4 hrs after ethanol under the domain Ethanol HIC. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Neocortex Gene Expression Correlates for HAND_4HOURS measured in BXD RI Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The HAND_4HOURS measures Handling induced convulsions 4 hrs after ethanol under the domain Ethanol HIC. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Neocortex Gene Expression Correlates for HAND_7HOURS measured in BXD RI Females & Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The HAND_7HOURS measures Handling induced convulsions 7 hrs after ethanol under the domain Ethanol HIC. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
QTL for morphine antinociception on Chr10 at D10Mit51 (19.52 Mbp , Build 37)
Description:
morphine antinociception spans 0.00 - 44.52 Mbp (NCBI Build 37) on Chr10. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Authors:
Bergeson SE, Helms ML, O\'Toole LA, Jarvis MW, Hain HS, Mogil JS, Belknap JK
QTL for morphine preference on Chr10 at D10MIT282 (24.33 Mbp , Build 37)
Description:
morphine preference spans 0.00 - 49.33 Mbp (NCBI Build 37) on Chr10. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Authors:
Berrettini WH, Ferraro TN, Alexander RC, Buchberg AM, Vogel WH
QTL for alcohol preference locus on Chr10 at D10Mit126 (39.43 Mbp , Build 37)
Description:
alcohol preference locus spans 14.43 - 64.43 Mbp (NCBI Build 37) on Chr10. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for alcohol preference locus on Chr10 at D10Mit126 (39.43 Mbp , Build 37)
Description:
alcohol preference locus spans 14.43 - 64.43 Mbp (NCBI Build 37) on Chr10. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Genes associated with Homo sapiens that interact with the MeSH term 'Arsenicals' (D001152). Incorporates data from 197 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term '(6-(4-(2-piperidin-1-ylethoxy)phenyl))-3-pyridin-4-ylpyrazolo(1,5-a)pyrimidine' (C516138). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'arsenite' (C015001). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Mitoxantrone' (D008942). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'alitretinoin' (C103303). Incorporates data from 8 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Vinca Alkaloids' (D014748). Incorporates data from 1138 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Tretinoin' (D014212). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Platichthys flesus that interact with the MeSH term 'pentabromodiphenyl ether' (C086401). Incorporates data from 4 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Paclitaxel' (D017239). Incorporates data from 5 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term '4-oxoretinoic acid' (C002202). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'panobinostat' (C496932). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'propionaldehyde' (C005556). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
GeneWeaver