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GeneSets with the Same Publication

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			GeneSet Title
Tier IV	Human	1876 Genes	GS399847 Genes with upregulated whole blood transcription in COVID-19 patients
			LABEL: COVID-19 up whole blood DESCRIPTION: This set describes genes whose transcription is up-regulated in the whole blood of COVID-19 patients versus healthy donors. Genes listed in table S2 were mapped to ENSEMBL identifiers. Values are the reported log2 fold-change.
Tier V	Human	1914 Genes	GS399884 Genes with upregulated whole blood transcription in COVID-19 patients (HGNC)
			LABEL: COVID-19 up whole blood (HGNC) DESCRIPTION: This set describes genes whose transcription is upregulated in the whole blood of COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using HGNC identifiers. Identifiers that couldn't be mapped were omited from the set. Values are the reported log2 fold-change.
Tier V	Human	725 Genes	GS399898 Genes with downregulated whole blood transcription in COVID-19 patients (HGNC)
			LABEL: COVID-19 down whole blood DESCRIPTION: This set describes genes whose transcription is downregulated in the whole blood of COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using HGNC Gene identifiers. Genes that could not be converted were omitted from the set. Values are the reported log2 fold-change.
Tier IV	Human	912 Genes	GS399899 Genes with downregulated whole blood transcription in COVID-19 patients
			LABEL: COVID-19 down whole blood DESCRIPTION: This set describes genes whose transcription is downregulated in the whole blood of COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using the core ENSEMBL Gene identifiers. Values are the reported log2 fold-change.
Tier IV	Human	623 Genes	GS399938 Genes with upregulated whole blood transcription in severe versus mild COVID-19 patients
			LABEL: Up in severe versus mild COVID-19 DESCRIPTION: This set describes genes whose transcription is upregulated in the whole blood of COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using the core ENSEMBL Gene identifiers. Values are the reported log2 fold-change.
Tier IV	Human	352 Genes	GS400102 Genes with downregulated whole blood transcription in severe versus mild COVID-19 patients
			LABEL: Down in severe versus mild COVID-19 DESCRIPTION: This set describes genes whose transcription is down-regulated in the whole blood of COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using the core ENSEMBL Gene identifiers. Values are the reported log2 fold-change.
Tier IV	Human	3109 Genes	GS400103 Genes with upregulated whole blood RNA levels in severe COVID-19 patients versus healthy controls
			LABEL: severe COVID-19 up whole blood DESCRIPTION: This set describes genes whose transcription is upregulated in the whole blood of severe COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using ENSEMBL Gene identifiers. Values are the reported log2 fold-change.
Tier IV	Human	2311 Genes	GS400104 Genes with downregulated whole blood RNA levels in severe COVID-19 patients versus healthy controls
			LABEL: severe COVID-19 down whole blood DESCRIPTION: This set describes genes whose transcription is down-regulated in the whole blood of severe COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using the core ENSEMBL Gene identifiers. Values are the reported log2 fold-change.
Tier IV	Human	1439 Genes	GS400105 Genes with upregulated whole blood RNA levels in mild COVID-19 patients versus healthy controls
			LABEL: mild COVID-19 up whole blood DESCRIPTION: This set describes genes whose transcription is upregulated in the whole blood of severe COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using ENSEMBL Gene identifiers. Genes that could not be converted were omitted from the set. Values are the reported log2 fold-change.
Tier IV	Human	464 Genes	GS400106 Genes with downregulated whole blood RNA levels in mild COVID-19 patients versus healthy controls
			LABEL: mild COVID-19 down whole blood DESCRIPTION: This set describes genes whose transcription is down-regulated in the whole blood of mild COVID-19 patients versus healthy donors. Genes listed in table S2 were entered using the core ENSEMBL Gene identifiers. Values are the reported log2 fold-change.
Tier IV	Human	703 Genes	GS400110 Genes downregulated in granulocytes comparing early stages of severe versus mild COVID-19
			LABEL: down in early COVID-19 granulocytes, severe vs mild DESCRIPTION: This set includes genes that are downregulated in granulocytes from patients with severe versus mild disease at an early stage. Early stage was considered to be from days 1-10 after symptoms. Genes from table S4 were entered using ENSEMBL identifiers. Values given are log2 fold change in expression levels.
Tier IV	Human	314 Genes	GS400112 Genes upregulated in granulocytes comparing early stages of severe versus mild COVID-19
			LABEL: up in early COVID-19 granulocytes, severe vs mild DESCRIPTION: This set includes genes that are upregulated in granulocytes from patients with severe versus mild disease at an early stage. Early stage was considered to be from days 1-10 after symptoms. Genes from table S4 were entered using ENSEMBL identifiers. Values given are log2 fold change in expression levels.
Tier IV	Human	1924 Genes	GS400113 Genes downregulated in granulocytes comparing late stages of severe versus mild COVID-19
			LABEL: down in late COVID-19 granulocytes, severe vs mild DESCRIPTION: This set includes genes that are downregulated in granulocytes from patients with severe versus mild disease at a late stage. Early stage was considered to be later than 10 days after symptoms. Genes from table S4 were entered using ENSEMBL identifiers. Values given are log2 fold change in expression levels.
Tier IV	Human	445 Genes	GS400114 Genes upregulated in granulocytes comparing late stages of severe versus mild COVID-19
			LABEL: up in late COVID-19 granulocytes, severe vs mild DESCRIPTION: This set includes genes that are upregulated in granulocytes from patients with severe versus mild disease at a late stage. Early stage was considered to be later than 10 days after symptoms. Genes from table S4 were entered using ENSEMBL identifiers. Values given are log2 fold change in expression levels.

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Supported by NIH R01 AA18776 jointly funded by NIAAA and NIDA, and JAX Center for Precision Genetics NIH U54 OD 020351

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