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GeneSets with the Same Publication
GeneSets Sharing a Publication with GS380553
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GeneSet Title
Tier IV
24 Genes
GS380553
Up-regulated Immune genes involved in response to Coronovirus avian infectious bronchitis infection in chicken kidney
LABEL:
Up-regulated Immune genes in chicken
DESCRIPTION:
One day old specific pathogen-free White Leghorn chicks were intra-nasally inoculated with Avian infectious bronchitis virus (IBV). Total RNA was extracted from of uninfected birds or those that died from IBV infection. Samples were hybridized to a Agilent custom checken oligo microarray. The GO category for biological process and KEGG pathway analysis for carried out for differentially expressed (DE) genes, and P value < 0.05 and a FDR of < 0.05 was used as a threshold. The DE genes mainly clustered into 12 functional groups. Here genes up-regulated that are associated with innate immune response are shown. Genes were considered to be significantly u--regulated or down-regulated if the change in their relative expression levels was > 2-fold or < 2-fold. The following gene symbols were not annotated in this gene set as they were not found in GeneWeaver IL1R1, JUN, DUSP4, VNN1, TLR4 and C1R.
Tier IV
9 Genes
GS380554
Down-regulated immune genes involved in response to Coronovirus avian infectious bronchitis infection in chicken kidney
LABEL:
Down-regulated Immune genes in chicken
DESCRIPTION:
One day old specific pathogen-free White Leghorn chicks were intra-nasally inoculated with Avian infectious bronchitis virus (IBV). Total RNA was extracted from of uninfected birds or those that died from IBV infection. Samples were hybridized to a Agilent custom checken oligo microarray. The GO category for biological process and KEGG pathway analysis for carried out for differentially expressed (DE) genes, and P value < 0.05 and a FDR of < 0.05 was used as a threshold. The DE genes mainly clustered into 12 functional groups. Here genes down-regulated that are associated with innate immune response are shown. Genes were considered to be significantly up--regulated or down-regulated if the change in their relative expression levels was > 2-fold or < 2-fold. The gene MASP1 was not included in this gene set as the id was not found by GeneWeaver.
Tier IV
17 Genes
GS380555
Up-regulated Cytokine-mediated pathway genes involved in response to Coronovirus avian infectious bronchitis infection in chicken kidney
LABEL:
Up-regulated Cytokine genes in chicken
DESCRIPTION:
One day old specific pathogen-free White Leghorn chicks were intra-nasally inoculated with Avian infectious bronchitis virus (IBV). Total RNA was extracted from of uninfected birds or those that died from IBV infection. Samples were hybridized to a Agilent custom checken oligo microarray. The GO category for biological process and KEGG pathway analysis for carried out for differentially expressed (DE) genes, and P value < 0.05 and a FDR of < 0.05 was used as a threshold. The DE genes mainly clustered into 12 functional groups. Here genes up-regulated that are associated with the cytokine-mediated signalling pathway are shown. Genes were considered to be significantly up--regulated or down-regulated if the change in their relative expression levels was > 2-fold or < 2-fold. GeneWeaver did not find ids for the following genes which were consequentially not included, IFI35, PML and IRF1.
Tier IV
3 Genes
GS380556
Down-regulated Cytokine-mediated pathway genes involved in response to Coronovirus avian infectious bronchitis infection in chicken kidney
LABEL:
Down-regulated Cytokine genes in chicken
DESCRIPTION:
One day old specific pathogen-free White Leghorn chicks were intra-nasally inoculated with Avian infectious bronchitis virus (IBV). Total RNA was extracted from of uninfected birds or those that died from IBV infection. Samples were hybridized to a Agilent custom checken oligo microarray. The GO category for biological process and KEGG pathway analysis for carried out for differentially expressed (DE) genes, and P value < 0.05 and a FDR of < 0.05 was used as a threshold. The DE genes mainly clustered into 12 functional groups. Here genes down-regulated that are associated with the cytokine-mediated signalling pathway are shown. Genes were considered to be significantly up--regulated or down-regulated if the change in their relative expression levels was > 2-fold or < 2-fold.
Tier IV
19 Genes
GS380557
Up-regulated Inflamatory response genes involved in response to Coronovirus avian infectious bronchitis infection in chicken kidney
LABEL:
Up-regulated Inflamatory response genes involved in response to Coronovirus avian infectious bronchitis infection in chicken kidney
DESCRIPTION:
One day old specific pathogen-free White Leghorn chicks were intra-nasally inoculated with Avian infectious bronchitis virus (IBV). Total RNA was extracted from of uninfected birds or those that died from IBV infection. Samples were hybridized to a Agilent custom checken oligo microarray. The GO category for biological process and KEGG pathway analysis for carried out for differentially expressed (DE) genes, and P value < 0.05 and a FDR of < 0.05 was used as a threshold. The DE genes mainly clustered into 12 functional groups. Here genes up-regulated that are associated with Inflamatory response are shown. Genes were considered to be significantly up--regulated or down-regulated if the change in their relative expression levels was > 2-fold or < 2-fold. The following genes werre not included in this gene set as GeneWeaver did not find their ids SCG2, S100A9, VNN1 and CCL17.
Tier IV
10 Genes
GS380558
Down-regulated Inflamatory response genes involved in response to Coronovirus avian infectious bronchitis infection in chicken kidney
LABEL:
Down-regulated Inflamatory response genes in chicken
DESCRIPTION:
One day old specific pathogen-free White Leghorn chicks were intra-nasally inoculated with Avian infectious bronchitis virus (IBV). Total RNA was extracted from of uninfected birds or those that died from IBV infection. Samples were hybridized to a Agilent custom checken oligo microarray. The GO category for biological process and KEGG pathway analysis for carried out for differentially expressed (DE) genes, and P value < 0.05 and a FDR of < 0.05 was used as a threshold. The DE genes mainly clustered into 12 functional groups. Here genes down-regulated that are associated with Inflamatory response s are shown. Genes were considered to be significantly up--regulated or down-regulated if the change in their relative expression levels was > 2-fold or < 2-fold. Note that GeneWeaver did not find the id for gene SERPINA1, and consequently this gene was not loaded in this gene set.
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