GeneSet Information

Tier IV GS408061 • Differentially expressed genes associated with opioid use disorder in postmortem human brain_qvalue

DESCRIPTION:

Lists of differentially expressed RNAs. Genes met cutoff criteria padj < 0.2 and |FC| > 1.5. Using next-generation RNA sequencing, authors identified 394 differentially expressed (DE) coding and long noncoding (lnc) RNAs as well as 213 DE proteins in Brodmann Area 9 of opioid use disorder subjects (postmortem human brain). The RNA and protein changes converged on pro-angiogenic gene networks and cytokine signaling pathways. Four genes (LGALS3, SLC2A1, PCLD1, and VAMP1) were dysregulated in both RNA and protein. Dissecting these DE genes and networks, we found cell type-specific effects with enrichment in astrocyte, endothelial, and microglia correlated genes.

LABEL:

Opioid_postmortem human brain_qvalue

SCORE TYPE:

Q-Value

DATE ADDED:

2024-02-06

DATE UPDATED:

2024-04-25

SPECIES:

AUTHORS:

None

TITLE:

None

JOURNAL:

None

Annotation Information

No sequence read archive data associated with this GeneSet.


Clinical Coding (D059019)
Cytokines (D016207)
Proteins (D011506)
Microglia (D017628)
signaling (GO:0023052)
Pathways, networks and models (EDAM_topic:0602)
Signaling pathways (EDAM_topic:0754)
Protein analysis (EDAM_topic:0078)
L-proline residue (CHEBI:50342)
methionine (CHEBI:16811)
L-methionine (CHEBI:16643)
L-methionine residue (CHEBI:16044)
L-prolyl group (CHEBI:32865)
protein polypeptide chain (CHEBI:16541)
ribonucleic acid (CHEBI:33697)
RNA-seq evidence (ECO:0000295)
generation (EFO:0000507)
cell type (EFO:0000324)
Brodmann (1909) area 9 (UBERON:0013540)
Brodmann area (UBERON:0013529)
adult cerebral ganglion (UBERON:6110636)

Gene List • 370 Genes

Uploaded As Gene Symbol Homology Score Priority LinkOuts Emphasis