DESCRIPTION:

List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Blood pressure. The EFO term pulse pressure measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.

LABEL:

GWAS: pulse pressure measurement

SCORE TYPE:

P-Value

DATE ADDED:

2017-05-02

DATE UPDATED:

2024-04-25

SPECIES:

AUTHORS:

TN Kelly, F Takeuchi, Y Tabara, TL Edwards, YJ Kim, P Chen, H Li, Y Wu, CF Yang, Y Zhang, D Gu, T Katsuya, T Ohkubo, YT Gao, MJ Go, YY Teo, L Lu, NR Lee, LC Chang, H Peng, Q Zhao, E Nakashima, Y Kita, XO Shu, NH Kim, ES Tai, Y Wang, LS Adair, CH Chen, S Zhang, C Li, T Nabika, S Umemura, Q Cai, YS Cho, TY Wong, J Zhu, JY Wu, X Gao, JE Hixson, H Cai, J Lee, CY Cheng, DC Rao, YB Xiang, MC Cho, BG Han, A Wang, FJ Tsai, K Mohlke, X Lin, MK Ikram, JY Lee, W Zheng, M Tetsuro, N Kato, J He

TITLE:

Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.

JOURNAL:

Hypertension (Dallas, Tex. : 1979) Nov 2013, Vol 62, pp. 853-9

ABSTRACT:

We conducted a genome-wide association study meta-analysis of mean arterial pressure and pulse pressure among 26,600 East Asian participants (stage 1) followed by replication study of up to 28,783 participants (stage 2). For novel loci, statistical significance was determined by a P<5.0×10(-8) in joint analysis of stage 1 and stage 2 data. For loci reported by the previous mean arterial and pulse pressure genome-wide association study meta-analysis in Europeans, evidence of transethnic replication was determined by consistency in effect direction and a Bonferroni-corrected P<1.4×10(-3). No novel loci were identified by the current study. Five independent mean arterial pressure variants demonstrated robust evidence for transethnic replication including rs17249754 at ATP2B1 (P=7.5×10(-15)), rs2681492 at ATP2B1 (P=3.4×10(-7)), rs11191593 at NT5C2 (1.1×10(-6)), rs3824755 at CYP17A1 (P=1.2×10(-6)), and rs13149993 at FGF5 (P=2.4×10(-4)). Two additional variants showed suggestive evidence of transethnic replication (consistency in effect direction and P<0.05), including rs319690 at MAP4 (P=0.014) and rs1173771 at NPR3 (P=0.018). For pulse pressure, robust evidence of replication was identified for 2 independent variants, including rs17249754 at ATP2B1 (P=1.2×10(-5)) and rs11191593 at NT5C2 (P=1.1×10(-3)), with suggestive evidence of replication among an additional 2 variants including rs3824755 at CYP17A1 (P=6.1×10(-3)) and rs2681492 at ATP2B1 (P=9.0×10(-3)). Replicated variants demonstrated consistency in effect sizes between East Asian and European samples, with effect size differences ranging from 0.03 to 0.24 mm Hg for mean arterial pressure and from 0.03 to 0.21 mm Hg for pulse pressure. In conclusion, we present the first evidence of transethnic replication of several mean arterial and pulse pressure loci in an East Asian population. PUBMED: 24001895
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