GeneSet Information

Tier II GS135967 • HDL QTL 4 (Hdlq4, Published QTL Chr 15)

DESCRIPTION:

QTL associated with HDL QTL 4. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (96095961)

LABEL:

QTL-Hdlq4-Mouse-Chr 15

SCORE TYPE:

Binary

DATE ADDED:

2012-04-02

DATE UPDATED:

2024-04-25

SPECIES:

AUTHORS:

Pitman WA, Korstanje R, Churchill GA, Nicodeme E, Albers JJ, Cheung MC, Staton MA, Sampson SS, Harris S, Paigen B

TITLE:

Quantitative trait locus mapping of genes that regulate HDL cholesterol in SM/J and NZB/B1NJ inbred mice.

JOURNAL:

Physiological genomics None 2002, Vol 9, pp. 93-102

ABSTRACT:

To investigate the quantitative trait loci (QTL) regulating plasma cholesterol, the female progeny of an (SMxNZB/ B1NJ)xNZB/B1NJ backcross were fed an atherogenic diet. After 18 wk, plasma total cholesterol and high-density lipoprotein cholesterol (HDL-C) was measured. HDL-C concentrations were greater in NZB than in SM mice. For standard chow-fed mice, QTL were found near D5Mit370 and D18Mit34. For mice fed an atherogenic diet, a QTL was found near D5Mit239. The QTL for chow-fed and atherogenic-fed mice on chromosome 5 seem to be two different loci. We used a multitrait analysis to rule out pleiotropy in favor of a two-QTL hypothesis. Furthermore, the HDL-C in these strains was induced by the high-fat diet. For inducible HDL-C, one significant locus was found near D15Mit39. The gene for an HDL receptor, Srb1, maps close to the HDL-C QTL at D5Mit370, but the concentrations of Srb1 mRNA and SR-B1 protein and the gene sequence of NZB/B1NJ and SM/J did not support Srb1 as a candidate gene. With these QTL, we have identified chromosomal regions that affect lipoprotein profiles in these strains. PUBMED: 12006675
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Annotation Information

No sequence read archive data associated with this GeneSet.


Chromosomes, Human, Pair 5 (D002895)
Cholesterol, HDL (D008076)
Lipoproteins (D008074)
Chromosomes (D002875)
Quantitative Trait Loci (D040641)
RNA, Messenger (D012333)
Attention (D001288)
Cholesterol (D002784)
Diet, Atherogenic (D004036)
high-density lipoprotein receptor activity (GO:0070506)
chromosome (GO:0005694)

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