Tier
Species
Size
Attr.
GeneSet
Tier III
279
GS14907: Nicotine Dependence Genes found in Genome-wide Association Studies (GWAS)
Figure Label:
HumanNicotine Dependence
Description:
Genome-wide association studies are conducted of two human cohorts, one group demonstrating nicotine dependence and another successfully quitting smoking. Study shows that some genetic components associated with the ability to quit overlap while many do not overlap. To perform the study, DNA samples were obtained from NIH volunteers and the allelic frequencies of the samples were analyzed using Affymetrix array analysis. This gene set comprises 290 genes associated with nicotine dependence.
Authors:
Drgon T, Montoya I, Johnson C, Liu QR, Walther D, Hamer D, Uhl GR
Tier III
23
GS75609: FC of the Probe Sets Encoding AMP Genes in Analysis in Ulcerative Colitis
Figure Label:
AMP Genes UC
Description:
FC of the probe sets encoding AMP genes that were significant in one of the performed comparative analyses in UC
Authors:
Arijs I, De Hertogh G, Lemaire K, Quintens R, Van Lommel L, Van Steen K, Leemans P, Cleynen I, Van Assche G, Vermeire S, Geboes K, Schuit F, Rutgeerts P
Tier III
23
GS75610: Fold Change of Probe Sets Encoding AMP Genes in Analysis of CrD
Figure Label:
AMP Genes CD
Description:
FC of the probe sets encoding AMP genes that were significant in one of the performed comparative analyses in CD
Authors:
Arijs I, De Hertogh G, Lemaire K, Quintens R, Van Lommel L, Van Steen K, Leemans P, Cleynen I, Van Assche G, Vermeire S, Geboes K, Schuit F, Rutgeerts P
Tier III
125
GS83601: Crohn's Disease
Figure Label:
Crohn's Disease
Description:
Compilation of gene sets.
Authors:
None
Tier III
153
GS83603: Ulcerative Colitis
Figure Label:
Ulcerative Colitis
Description:
Compiled list of gene sets
Authors:
None
Tier I
2016
GS123157: Carbamazepine interacting with Homo sapiens associated genes (MeSH:D002220) in CTD
Figure Label:
Carbamazepine H.s.
Description:
Genes associated with Homo sapiens that interact with the MeSH term 'Carbamazepine' (D002220). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Authors:
None
Tier III
152
GS218446: Ileal Genes Ulcerative Colitis
Figure Label:
Ileal Genes UC
Description:
Upregulated probes in 47 ileal CD compared to 52 non-CD (UC and control non-IBD) samples (number of probes = 269).
Authors:
Zhang T, Song B, Zhu W, Xu X, Gong QQ, Morando C, Dassopoulos T, Newberry RD, Hunt SR, Li E
262
GS219536: http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INNATE_IMMUNE_SYSTEM
Figure Label:
REACTOME_INNATE_IMMUNE_SYSTEM
Description:
REACTOME_INNATE_IMMUNE_SYSTEM
Authors:
None
262
GS220042: http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INNATE_IMMUNE_SYSTEM
Figure Label:
REACTOME_INNATE_IMMUNE_SYSTEM
Description:
REACTOME_INNATE_IMMUNE_SYSTEM
Authors:
None
262
GS220911: http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INNATE_IMMUNE_SYSTEM
Figure Label:
REACTOME_INNATE_IMMUNE_SYSTEM
Description:
REACTOME_INNATE_IMMUNE_SYSTEM
Authors:
None
262
GS221087: http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INNATE_IMMUNE_SYSTEM
Figure Label:
REACTOME_INNATE_IMMUNE_SYSTEM
Description:
REACTOME_INNATE_IMMUNE_SYSTEM
Authors:
None
262
GS221336: http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INNATE_IMMUNE_SYSTEM
Figure Label:
REACTOME_INNATE_IMMUNE_SYSTEM
Description:
REACTOME_INNATE_IMMUNE_SYSTEM
Authors:
None
Tier II
456
GS223381: Bone mineral density QTL 64 (Bmd64 Published QTL Chr 16)
Figure Label:
QTL-Bmd64-Rat-Chr 16
Description:
QTL Associated with Bone mineral density. On Chromosome 16 with a LOD score= 5.3, p-value =1.00E-04. From a(n) intercross of
Authors:
Koller DL, Liu L, Alam I, Sun Q, Econs MJ, Foroud T, Turner CH
Tier II
347
GS223588: Body weight QTL 164 (Bw164 Published QTL Chr 16)
Figure Label:
QTL-Bw164-Rat-Chr 16
Description:
QTL Associated with white adipose mass. On Chromosome 16 with a LOD score= 5, p-value =0.001. From a(n) intercross of
Authors:
Marissal-Arvy N, Heliès JM, Tridon C, Moisan MP, Mormède P
Tier II
347
GS223897: Abdominal fat weight QTL 7 (Abfw7 Published QTL Chr 16)
Figure Label:
QTL-Abfw7-Rat-Chr 16
Description:
QTL Associated with visceral adipose mass. On Chromosome 16 with a LOD score= 12.22, p-value =0.001. From a(n) intercross of
Authors:
Marissal-Arvy N, Heliès JM, Tridon C, Moisan MP, Mormède P
Tier II
334
GS223982: Pristane induced arthritis QTL 14 (Pia14 Published QTL Chr 16)
Figure Label:
QTL-Pia14-Rat-Chr 16
Description:
QTL Associated with Joint/bone inflammation. On Chromosome 16 with a LOD score= 4.4, p-value =. From a(n) Intercross of E3xLEW.1F
Authors:
Lu S, Nordquist N, Holmberg J, Olofsson P, Pettersson U, Holmdahl R
Tier II
583
GS224124: Non-insulin dependent diabetes mellitus QTL 29 (Niddm29 Published QTL Chr 16)
Figure Label:
QTL-Niddm29-Rat-Chr 16
Description:
QTL Associated with Glucose level. On Chromosome 16 with a LOD score= 3.54, p-value =. From a(n) F2 of OLETF/OtkxF344/Crj
Authors:
Sugiura K, Miyake T, Taniguchi Y, Yamada T, Moralejo DH, Wei S, Wei K, Sasaki Y, Matsumoto K
Tier II
459
GS224205: Stress response QTL 22 (Stresp22 Published QTL Chr 16)
Figure Label:
QTL-Stresp22-Rat-Chr 16
Description:
QTL Associated with Stress response. On Chromosome 16 with a LOD score= 2.8, p-value =. From a(n) of
Authors:
Llamas B, Contesse V, Guyonnet-Duperat V, Vaudry H, Mormède P, Moisan MP
Tier II
96
GS224668: Aerobic running capacity QTL 2 (Arunc2 Published QTL Chr 16)
Figure Label:
QTL-Arunc2-Rat-Chr 16
Description:
QTL Associated with Aerobic running capacity. On Chromosome 16 with a LOD score= 2.9, p-value =. From a(n) of
Authors:
Ways JA, Cicila GT, Garrett MR, Koch LG
Tier II
997
GS224672: Aerobic running capacity QTL 4 (Arunc4 Published QTL Chr 16)
Figure Label:
QTL-Arunc4-Rat-Chr 16
Description:
QTL Associated with Aerobic running capacity. On Chromosome 16 with a LOD score= , p-value =0.03. From a(n) of
Authors:
Ways JA, Smith BM, Barbato JC, Ramdath RS, Pettee KM, DeRaedt SJ, Allison DC, Koch LG, Lee SJ, Cicila GT
Tier II
456
GS224823: Bone structure and strength QTL 45 (Bss45 Published QTL Chr 16)
Figure Label:
QTL-Bss45-Rat-Chr 16
Description:
QTL Associated with Bone structure. On Chromosome 16 with a LOD score= 5.13, p-value =1.00E-04. From a(n) intercross of
Authors:
Sun Q, Alam I, Liu L, Koller DL, Carr LG, Econs MJ, Foroud T, Turner CH
Tier II
347
GS224874: Food consumption QTL 22 (Foco22 Published QTL Chr 16)
Figure Label:
QTL-Foco22-Rat-Chr 16
Description:
QTL Associated with Consumption level. On Chromosome 16 with a LOD score= 15, p-value =0.001. From a(n) intercross of
Authors:
Marissal-Arvy N, Diane A, Moisan MP, Larue-Achagiotis C, Tridon C, Tome D, Fromentin G, Mormède P
Tier II
463
GS224894: Activity QTL 5 (Activ5 Published QTL Chr 16)
Figure Label:
QTL-Activ5-Rat-Chr 16
Description:
QTL Associated with Activity level. On Chromosome 16 with a LOD score= 3.78, p-value =2.80E-04. From a(n) F2 of reciprocal crosses of
Authors:
Redina OE, Smolenskaya SE, Maslova LN, Sakharov DG, Markel' AL
262
GS225670: http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INNATE_IMMUNE_SYSTEM
Figure Label:
REACTOME_INNATE_IMMUNE_SYSTEM
Description:
REACTOME_INNATE_IMMUNE_SYSTEM
Authors:
None
Tier I
191
GS227131: MSigDB Geneset - GSE36476_YOUNG_VS_OLD_DONOR_MEMORY_CD4_TCELL_16H_TSST_ACT_DN
Figure Label:
GSE36476_YOUNG_VS_OLD_DONOR_MEMORY_CD4_TCELL_16H_TSST_ACT_DN
Description:
GSE36476_YOUNG_VS_OLD_DONOR_MEMORY_CD4_TCELL_16H_TSST_ACT_DN
Genes down-regulated in comparison of memory CD4 <a href='http://www.ncbi.nlm.nih.gov/gene/920'>[GeneID=920]</a> T cells from young donors treated with TSST at 16 h versus those from old donors treated with TSST at 16 h.
c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies.
Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections.
gene2msig v. 0.1.0
Last updated 2015.08.31
Authors:
None
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