List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Ankylosing spondylitis. The EFO term ankylosing spondylitis was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
DM Evans, CC Spencer, JJ Pointon, Z Su, D Harvey, G Kochan, U Oppermann, U Opperman, A Dilthey, M Pirinen, MA Stone, L Appleton, L Moutsianas, L Moutsianis, S Leslie, T Wordsworth, TJ Kenna, T Karaderi, GP Thomas, MM Ward, MH Weisman, C Farrar, LA Bradbury, P Danoy, RD Inman, W Maksymowych, D Gladman, P Rahman, A Morgan, H Marzo-Ortega, P Bowness, K Gaffney, JS Gaston, M Smith, J Bruges-Armas, AR Couto, R Sorrentino, F Paladini, MA Ferreira, H Xu, Y Liu, L Jiang, C Lopez-Larrea, R DÃaz-Peña, A López-Vázquez, T Zayats, G Band, C Bellenguez, H Blackburn, JM Blackwell, E Bramon, SJ Bumpstead, JP Casas, A Corvin, N Craddock, P Deloukas, S Dronov, A Duncanson, S Edkins, C Freeman, M Gillman, E Gray, R Gwilliam, N Hammond, SE Hunt, J Jankowski, A Jayakumar, C Langford, J Liddle, HS Markus, CG Mathew, OT McCann, MI McCarthy, CN Palmer, L Peltonen, R Plomin, SC Potter, A Rautanen, R Ravindrarajah, M Ricketts, N Samani, SJ Sawcer, A Strange, RC Trembath, AC Viswanathan, M Waller, P Weston, P Whittaker, S Widaa, NW Wood, G McVean, JD Reveille, BP Wordsworth, MA Brown, P Donnelly
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Ankylosing spondylitis. The EFO term ankylosing spondylitis was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JD Reveille, AM Sims, P Danoy, DM Evans, P Leo, JJ Pointon, R Jin, X Zhou, LA Bradbury, LH Appleton, JC Davis, L Diekman, T Doan, A Dowling, R Duan, EL Duncan, C Farrar, J Hadler, D Harvey, T Karaderi, R Mogg, E Pomeroy, K Pryce, J Taylor, L Savage, P Deloukas, V Kumanduri, L Peltonen, SM Ring, P Whittaker, E Glazov, GP Thomas, WP Maksymowych, RD Inman, MM Ward, MA Stone, MH Weisman, BP Wordsworth, MA Brown
cocaine related behavior 6 (Cocrb6) spans 68.726231 - 118.726231 Mbp (NCBI Build 37) on Chr 5. Obtained from MGI (http://www.informatics.jax.org) by searching for QTLs containing the keyword .
QTL for cocaine related behavior on Chr5 at D5Mit7 (103.64 Mbp , Build 37)
Description:
cocaine related behavior spans 78.64 - 128.64 Mbp (NCBI Build 37) on Chr5. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for differences in cocaine responsiveness on Chr5 at Cyp3 (108.78 Mbp , Build 37)
Description:
differences in cocaine responsiveness spans 83.78 - 133.78 Mbp (NCBI Build 37) on Chr5. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for METH responses for chewing on Chr5 at D5Mit10 (111.96 Mbp , Build 37)
Description:
METH responses for chewing spans 86.96 - 136.96 Mbp (NCBI Build 37) on Chr5. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Genes associated with Homo sapiens that interact with the MeSH term 'entinostat' (C118739). Incorporates data from 11 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Arsenic' (D001151). Incorporates data from 87 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Carassius auratus that interact with the MeSH term 'Diuron' (D004237). Incorporates data from 6 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Oryctolagus cuniculus that interact with the MeSH term 'Ionomycin' (D015759). Incorporates data from 6 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Smoke' (D012906). Incorporates data from 54 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term '(6-(4-(2-piperidin-1-ylethoxy)phenyl))-3-pyridin-4-ylpyrazolo(1,5-a)pyrimidine' (C516138). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Demecolcine' (D003703). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Cricetulus griseus that interact with the MeSH term 'Thapsigargin' (D019284). Incorporates data from 376 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'sulforafan' (C016766). Incorporates data from 7 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'nickel sulfate' (C029938). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
GeneWeaver