Striatum Gene Expression Correlates for HAND_7HOURS measured in BXD RI Females & Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The HAND_7HOURS measures Handling induced convulsions 7 hrs after ethanol under the domain Ethanol HIC. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
alcohol preference 3 QTL 124.51 - 174.51 Mbp (NCBI Build 37) on Chr4. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for cocaine related behavior on Chr4 at 34M15-SP6 (151.65 Mbp , Build 37)
Description:
cocaine related behavior spans 126.65 - 176.65 Mbp (NCBI Build 37) on Chr4. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for ethanol conditioned taste aversion on Chr4 at D4Ncvs25 (151.65 Mbp , Build 37)
Description:
ethanol conditioned taste aversion spans 126.65 - 176.65 Mbp (NCBI Build 37) on Chr4. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for METH responses for climbing on Chr4 at Sac (151.65 Mbp , Build 37)
Description:
METH responses for climbing spans 126.65 - 176.65 Mbp (NCBI Build 37) on Chr4. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Genes associated with Homo sapiens that interact with the MeSH term 'Tretinoin' (D014212). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Tobacco Smoke Pollution' (D014028). Incorporates data from 5 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Aflatoxin B1' (D016604). Incorporates data from 5 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'propionaldehyde' (C005556). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Perca flavescens that interact with the MeSH term 'Copper' (D003300). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Ethanol induced LORR Chr# 4 rs3695715 (3649824) with right flanking marker rs3663950 (135285447) and left marker rs6279100 (155557887). This was mapped in 300 + (b6x129)F2 mice.
Genes with particular expression in the Inferior colliculus. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Entorhinal area, lateral part, layer 6a. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the posteromedial visual area, layer 2/3. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Entorhinal area, lateral part, layer 3. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Entorhinal area, lateral part, layer 6b. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Lateral visual area, layer 6a. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Interposed nucleus. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Entorhinal area, lateral part, layer 4. Data represent fold expression difference in structure versus grey matter average expression.
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