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GeneSets with the Same Publication

GeneSets Sharing a Publication with GS271842

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					GeneSet Title
	Tier III	Human		80 Genes	GS271792 Genes upregulated in the Basal-Like Immune-Activated subtype of triple negative breast cancer
					LABEL: Up in BLIA subtype of TNBC DESCRIPTION: Genes upregulated by at least two-fold in the BLIA subtype of triple negative breast cancer. The data is from supplemental table S37 and the values reported are the fold changes calculated from the log values reported for the Discovery Set. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
	Tier III	Human		40 Genes	GS271793 Genes downregulated in the Basal-Like Immune-Activated subtype of Triple Negative Breast Cancer
					LABEL: Down in BLIA subtype of TNBC DESCRIPTION: Genes downregulated by at least two-fold in the BLIA subtype of breast cancer. The data is from supplemental table S37 and the values reported are the fold changes calculated from the log values reported for the Discovery Set. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
	Tier III	Human		43 Genes	GS271823 Genes upregulated in the Basal-Like Immune Suppresed subtype of Triple Negative Breast Cancer
					LABEL: Up in BLIS subtype of TNBC DESCRIPTION: Genes upregulated by at least two-fold in the BLIS subtype of breast cancer. The data is from supplemental table S37 and the values reported are the fold changes calculated from the log values reported for the Discovery Set. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
	Tier III	Human		81 Genes	GS271841 Genes downregulated in the Basal-Like Immune Suppressed subtype of Triple Negative Breast Cancer
					LABEL: Down in BLIS subtype of TNBC DESCRIPTION: Genes downregulated by at least two-fold in the BLIS subtype of triple negative breast cancer. The data is from supplemental table S37 and the values reported are the fold changes calculated from the log values reported for the Discovery Set. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
	Tier III	Human		395 Genes	GS271842 Genes upregulated in the Mesenchymal subtype of Triple Negative Breast Cancer
					LABEL: Up in MES subtype of TNBC DESCRIPTION: Genes upregulated by at least two-fold in the MES subtype of breast cancer. The data is from supplemental table S37 and the values reported are the fold changes calculated from the log values reported for the Discovery Set. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
	Tier III	Human		123 Genes	GS271843 Genes downregulated in the Mesenchymal subtype of Triple Negative Breast Cancer
					LABEL: Down in MES subtype of TNBC DESCRIPTION: Genes downregulated by at least two-fold in the MES subtype of triple negative breast cancer. The data is from supplemental table S37 and the values reported are the fold changes calculated from the log values reported for the Discovery Set. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
	Tier III	Human		164 Genes	GS271844 Genes upregulated in the Luminal Androgen Receptor subtype of Triple Negative Breast Cancer
					LABEL: Up in LAR subtype of TNBC DESCRIPTION: Genes upregulated by at least two-fold in the LAR subtype of triple negative breast cancer. The data is from supplemental table S37 and the values reported are the fold changes calculated from the log values reported for the Discovery Set. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
	Tier III	Human		165 Genes	GS271845 Genes downregulated in the Luminal Androgen Receptor subtype of Triple Negative Breast Cancer
					LABEL: Down in LAR subtype of TNBC DESCRIPTION: Genes downregulated by at least two-fold in the LAR subtype of triple negative breast cancer. The data is from supplemental table S37 and the values reported are the fold changes calculated from the log values reported for the Discovery Set. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.

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Supported by NIH R01 AA18776 jointly funded by NIAAA and NIDA, and JAX Center for Precision Genetics NIH U54 OD 020351