GeneSet Title
Tier III
Human
215 Genes
GS271616
LABEL: Up in BL1 subtype ot TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with approved symbols if they mapped to more than one identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
154 Genes
GS271617
LABEL: Up in BL2 subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
535 Genes
GS271618
LABEL: Up in IM suptype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
247 Genes
GS271619
LABEL: Up in M subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier V
Human
114 Genes
GS271620
LABEL: Up in MSL subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. HGNC identifiers were mapped to gene symbols manually. TGF1L1 was mapped to TGF1I1. Immune genes were not specificed in the text and were interpreted from supplemental figure 9 and were given the value 0.5.
Tier III
Human
807 Genes
GS271621
LABEL: Up in LAR subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
253 Genes
GS271627
LABEL: Down in BL1 subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
127 Genes
GS271636
LABEL: Down in BL2 subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. If symbols mapped to more than one HGNC identifier, they were associated with HGNC identifiers that mapped to approved symbols. Symbols which were not confidently mapped were not included.
Tier III
Human
303 Genes
GS271640
LABEL: Down in IM subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
445 Genes
GS271722
LABEL: Down in M subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
829 Genes
GS271724
LABEL: Up in MSL subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
255 Genes
GS271725
LABEL: Down in MSL subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
Tier III
Human
382 Genes
GS271729
LABEL: Down in LAR subtype of TNBCDESCRIPTION: Genes were identified by expression clustering analysis of a large number of breast cancer samples. Direction of regulation was curated from supplemental table S3B. Values represent Bonferroni corrected p-values of T-tests shown in supplemental table S3C. p-value scores were selected to be <0.05. HGNC identifiers were mapped to gene symbols manually. Symbols were associated with HGNC identifiers that mapped to approved symbols if they mapped to more than one HGNC identifier. Symbols which were not confidently mapped were not included.
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