List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was HIV-1 control. The EFO term HIV-1 infection was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
F Pereyra, X Jia, PJ McLaren, A Telenti, PI de Bakker, BD Walker, S Ripke, CJ Brumme, SL Pulit, M Carrington, CM Kadie, JM Carlson, D Heckerman, RR Graham, RM Plenge, SG Deeks, L Gianniny, G Crawford, J Sullivan, E Gonzalez, L Davies, A Camargo, JM Moore, N Beattie, S Gupta, A Crenshaw, NP Burtt, C Guiducci, N Gupta, X Gao, Y Qi, Y Yuki, A Piechocka-Trocha, E Cutrell, R Rosenberg, KL Moss, P Lemay, J O'Leary, T Schaefer, P Verma, I Toth, B Block, B Baker, A Rothchild, J Lian, J Proudfoot, DM Alvino, S Vine, MM Addo, TM Allen, M Altfeld, MR Henn, S Le Gall, H Streeck, DW Haas, DR Kuritzkes, GK Robbins, RW Shafer, RM Gulick, CM Shikuma, R Haubrich, S Riddler, PE Sax, ES Daar, HJ Ribaudo, B Agan, S Agarwal, RL Ahern, BL Allen, S Altidor, EL Altschuler, S Ambardar, K Anastos, B Anderson, V Anderson, U Andrady, D Antoniskis, D Bangsberg, D Barbaro, W Barrie, J Bartczak, S Barton, P Basden, N Basgoz, S Bazner, NC Bellos, AM Benson, J Berger, NF Bernard, AM Bernard, C Birch, SJ Bodner, RK Bolan, ET Boudreaux, M Bradley, JF Braun, JE Brndjar, SJ Brown, K Brown, ST Brown, J Burack, LM Bush, V Cafaro, O Campbell, J Campbell, RH Carlson, JK Carmichael, KK Casey, C Cavacuiti, G Celestin, ST Chambers, N Chez, LM Chirch, PJ Cimoch, D Cohen, LE Cohn, B Conway, DA Cooper, B Cornelson, DT Cox, MV Cristofano, G Cuchural, JL Czartoski, JM Dahman, JS Daly, BT Davis, K Davis, SM Davod, E DeJesus, CA Dietz, E Dunham, ME Dunn, TB Ellerin, JJ Eron, JJ Fangman, CE Farel, H Ferlazzo, S Fidler, A Fleenor-Ford, R Frankel, KA Freedberg, NK French, JD Fuchs, JD Fuller, J Gaberman, JE Gallant, RT Gandhi, E Garcia, D Garmon, JC Gathe, CR Gaultier, W Gebre, FD Gilman, I Gilson, PA Goepfert, MS Gottlieb, C Goulston, RK Groger, TD Gurley, S Haber, R Hardwicke, WD Hardy, PR Harrigan, TN Hawkins, S Heath, FM Hecht, WK Henry, M Hladek, RP Hoffman, JM Horton, RK Hsu, GD Huhn, P Hunt, MJ Hupert, ML Illeman, H Jaeger, RM Jellinger, M John, JA Johnson, KL Johnson, H Johnson, K Johnson, J Joly, WC Jordan, CA Kauffman, H Khanlou, RK Killian, AY Kim, DD Kim, CA Kinder, JT Kirchner, L Kogelman, EM Kojic, PT Korthuis, W Kurisu, DS Kwon, M LaMar, H Lampiris, M Lanzafame, MM Lederman, DM Lee, JM Lee, MJ Lee, ET Lee, J Lemoine, JA Levy, JM Llibre, MA Liguori, SJ Little, AY Liu, AJ Lopez, MR Loutfy, D Loy, DY Mohammed, A Man, MK Mansour, VC Marconi, M Markowitz, R Marques, JN Martin, HL Martin, KH Mayer, MJ McElrath, TA McGhee, BH McGovern, K McGowan, D McIntyre, GX Mcleod, P Menezes, G Mesa, CE Metroka, D Meyer-Olson, AO Miller, K Montgomery, KC Mounzer, EH Nagami, I Nagin, RG Nahass, MO Nelson, C Nielsen, DL Norene, DH O'Connor, BO Ojikutu, J Okulicz, OO Oladehin, EC Oldfield, SA Olender, M Ostrowski, WF Owen, E Pae, J Parsonnet, AM Pavlatos, AM Perlmutter, MN Pierce, JM Pincus, L Pisani, LJ Price, L Proia, RC Prokesch, HC Pujet, M Ramgopal, A Rathod, M Rausch, J Ravishankar, FS Rhame, CS Richards, DD Richman, B Rodes, M Rodriguez, RC Rose, ES Rosenberg, D Rosenthal, PE Ross, DS Rubin, E Rumbaugh, L Saenz, MR Salvaggio, WC Sanchez, VM Sanjana, S Santiago, W Schmidt, H Schuitemaker, PM Sestak, P Shalit, W Shay, VN Shirvani, VI Silebi, JM Sizemore, PR Skolnik, M Sokol-Anderson, JM Sosman, P Stabile, JT Stapleton, S Starrett, F Stein, HJ Stellbrink, FL Sterman, VE Stone, DR Stone, G Tambussi, RA Taplitz, EM Tedaldi, A Telenti, W Theisen, R Torres, L Tosiello, C Tremblay, MA Tribble, PD Trinh, A Tsao, P Ueda, A Vaccaro, E Valadas, TJ Vanig, I Vecino, VM Vega, W Veikley, BH Wade, C Walworth, C Wanidworanun, DJ Ward, DA Warner, RD Weber, D Webster, S Weis, DA Wheeler, DJ White, E Wilkins, A Winston, CG Wlodaver, A van't Wout, DP Wright, OO Yang, DL Yurdin, BW Zabukovic, KC Zachary, B Zeeman, M Zhao
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Autism. The EFO term autism was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
R Anney, L Klei, D Pinto, J Almeida, E Bacchelli, G Baird, N Bolshakova, S Bölte, PF Bolton, T Bourgeron, S Brennan, J Brian, J Casey, J Conroy, C Correia, C Corsello, EL Crawford, M de Jonge, R Delorme, E Duketis, F Duque, A Estes, P Farrar, BA Fernandez, SE Folstein, E Fombonne, J Gilbert, C Gillberg, JT Glessner, A Green, J Green, SJ Guter, EA Heron, R Holt, JL Howe, G Hughes, V Hus, R Igliozzi, S Jacob, GP Kenny, C Kim, A Kolevzon, V Kustanovich, CM Lajonchere, JA Lamb, M Law-Smith, M Leboyer, A Le Couteur, BL Leventhal, XQ Liu, F Lombard, C Lord, L Lotspeich, SC Lund, TR Magalhaes, C Mantoulan, CJ McDougle, NM Melhem, A Merikangas, NJ Minshew, GK Mirza, J Munson, C Noakes, G Nygren, K Papanikolaou, AT Pagnamenta, B Parrini, T Paton, A Pickles, DJ Posey, F Poustka, J Ragoussis, R Regan, W Roberts, K Roeder, B Roge, ML Rutter, S Schlitt, N Shah, VC Sheffield, L Soorya, I Sousa, V Stoppioni, N Sykes, R Tancredi, AP Thompson, S Thomson, A Tryfon, J Tsiantis, H Van Engeland, JB Vincent, F Volkmar, JA Vorstman, S Wallace, K Wing, K Wittemeyer, S Wood, D Zurawiecki, L Zwaigenbaum, AJ Bailey, A Battaglia, RM Cantor, H Coon, ML Cuccaro, G Dawson, S Ennis, CM Freitag, DH Geschwind, JL Haines, SM Klauck, WM McMahon, E Maestrini, J Miller, AP Monaco, SF Nelson, JI Nurnberger, G Oliveira, JR Parr, MA Pericak-Vance, J Piven, GD Schellenberg, SW Scherer, AM Vicente, TH Wassink, EM Wijsman, C Betancur, JD Buxbaum, EH Cook, L Gallagher, M Gill, J Hallmayer, AD Paterson, JS Sutcliffe, P Szatmari, VJ Vieland, H Hakonarson, B Devlin
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Autism. The EFO term autism was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
R Anney, L Klei, D Pinto, R Regan, J Conroy, TR Magalhaes, C Correia, BS Abrahams, N Sykes, AT Pagnamenta, J Almeida, E Bacchelli, AJ Bailey, G Baird, A Battaglia, T Berney, N Bolshakova, S Bölte, PF Bolton, T Bourgeron, S Brennan, J Brian, AR Carson, G Casallo, J Casey, SH Chu, L Cochrane, C Corsello, EL Crawford, A Crossett, G Dawson, M de Jonge, R Delorme, I Drmic, E Duketis, F Duque, A Estes, P Farrar, BA Fernandez, SE Folstein, E Fombonne, CM Freitag, J Gilbert, C Gillberg, JT Glessner, J Goldberg, J Green, SJ Guter, H Hakonarson, EA Heron, M Hill, R Holt, JL Howe, G Hughes, V Hus, R Igliozzi, C Kim, SM Klauck, A Kolevzon, O Korvatska, V Kustanovich, CM Lajonchere, JA Lamb, M Laskawiec, M Leboyer, A Le Couteur, BL Leventhal, AC Lionel, XQ Liu, C Lord, L Lotspeich, SC Lund, E Maestrini, W Mahoney, C Mantoulan, CR Marshall, H McConachie, CJ McDougle, J McGrath, WM McMahon, NM Melhem, A Merikangas, O Migita, NJ Minshew, GK Mirza, J Munson, SF Nelson, C Noakes, A Noor, G Nygren, G Oliveira, K Papanikolaou, JR Parr, B Parrini, T Paton, A Pickles, J Piven, DJ Posey, A Poustka, F Poustka, A Prasad, J Ragoussis, K Renshaw, J Rickaby, W Roberts, K Roeder, B Roge, ML Rutter, LJ Bierut, JP Rice, J Salt, K Sansom, D Sato, R Segurado, L Senman, N Shah, VC Sheffield, L Soorya, I Sousa, V Stoppioni, C Strawbridge, R Tancredi, K Tansey, B Thiruvahindrapduram, AP Thompson, S Thomson, A Tryfon, J Tsiantis, H Van Engeland, JB Vincent, F Volkmar, S Wallace, K Wang, Z Wang, TH Wassink, K Wing, K Wittemeyer, S Wood, BL Yaspan, D Zurawiecki, L Zwaigenbaum, C Betancur, JD Buxbaum, RM Cantor, EH Cook, H Coon, ML Cuccaro, L Gallagher, DH Geschwind, M Gill, JL Haines, J Miller, AP Monaco, JI Nurnberger, AD Paterson, MA Pericak-Vance, GD Schellenberg, SW Scherer, JS Sutcliffe, P Szatmari, AM Vicente, VJ Vieland, EM Wijsman, B Devlin, S Ennis, J Hallmayer
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Glaucoma (primary angle closure). The EFO term primary angle closure glaucoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
CC Khor, T Do, H Jia, M Nakano, R George, K Abu-Amero, R Duvesh, LJ Chen, Z Li, ME Nongpiur, SA Perera, C Qiao, HT Wong, H Sakai, M Barbosa de Melo, MC Lee, AS Chan, Y Azhany, TL Dao, Y Ikeda, RA Perez-Grossmann, T Zarnowski, AC Day, JB Jonas, PO Tam, TA Tran, H Ayub, F Akhtar, S Micheal, PT Chew, LA Aljasim, T Dada, TT Luu, MS Awadalla, N Kitnarong, B Wanichwecharungruang, YY Aung, J Mohamed-Noor, S Vijayan, S Sarangapani, R Husain, A Jap, M Baskaran, D Goh, DH Su, H Wang, VK Yong, LW Yip, TB Trinh, M Makornwattana, TT Nguyen, EU Leuenberger, KH Park, WA Wiyogo, RS Kumar, C Tello, Y Kurimoto, SS Thapa, K Pathanapitoon, JF Salmon, YH Sohn, A Fea, M Ozaki, JS Lai, V Tantisevi, CC Khaing, T Mizoguchi, S Nakano, CY Kim, G Tang, S Fan, R Wu, H Meng, TT Nguyen, TD Tran, M Ueno, JM Martinez, N Ramli, YM Aung, RD Reyes, SA Vernon, SK Fang, Z Xie, XY Chen, JN Foo, KS Sim, TT Wong, DT Quek, R Venkatesh, S Kavitha, SR Krishnadas, N Soumittra, B Shantha, BA Lim, J Ogle, JP de Vasconcellos, VP Costa, RY Abe, BB de Souza, CC Sng, MC Aquino, E Kosior-Jarecka, GB Fong, VC Tamanaja, R Fujita, Y Jiang, N Waseem, S Low, HN Pham, S Al-Shahwan, ER Craven, MI Khan, R Dada, K Mohanty, MA Faiq, AW Hewitt, KP Burdon, EH Gan, A Prutthipongsit, T Patthanathamrongkasem, MA Catacutan, IR Felarca, CS Liao, E Rusmayani, VW Istiantoro, G Consolandi, G Pignata, C Lavia, P Rojanapongpun, L Mangkornkanokpong, S Chansangpetch, JC Chan, BN Choy, JW Shum, HM Than, KT Oo, AT Han, VH Yong, XY Ng, SR Goh, YF Chong, ML Hibberd, M Seielstad, E Png, SJ Dunstan, NV Chau, J Bei, YX Zeng, A Karkey, B Basnyat, F Pasutto, D Paoli, P Frezzotti, JJ Wang, P Mitchell, JH Fingert, RR Allingham, MA Hauser, ST Lim, SH Chew, RP Ebstein, A Sakuntabhai, KH Park, J Ahn, G Boland, H Snippe, R Stead, R Quino, SN Zaw, U Lukasik, R Shetty, M Zahari, HW Bae, NL Oo, T Kubota, A Manassakorn, WL Ho, L Dallorto, YH Hwang, CA Kiire, M Kuroda, ZE Djamal, JI Peregrino, A Ghosh, JW Jeoung, TS Hoan, N Srisamran, T Sandragasu, SH Set, VH Doan, SS Bhattacharya, CL Ho, DT Tan, R Sihota, SC Loon, K Mori, S Kinoshita, AI Hollander, R Qamar, YX Wang, YY Teo, ES Tai, C Hartleben-Matkin, D Lozano-Giral, SM Saw, CY Cheng, JC Zenteno, CP Pang, HT Bui, O Hee, JE Craig, DP Edward, M Yonahara, JM Neto, ML Guevara-Fujita, L Xu, R Ritch, AT Liza-Sharmini, TY Wong, S Al-Obeidan, NH Do, P Sundaresan, CC Tham, PJ Foster, L Vijaya, K Tashiro, EN Vithana, N Wang, T Aung
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hirschsprung disease. The EFO term Hirschsprung disease was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
MM Garcia-Barcelo, CS Tang, ES Ngan, VC Lui, Y Chen, MT So, TY Leon, XP Miao, CK Shum, FQ Liu, MY Yeung, ZW Yuan, WH Guo, L Liu, XB Sun, LM Huang, JF Tou, YQ Song, D Chan, KM Cheung, KK Wong, SS Cherny, PC Sham, PK Tam
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Biliary atresia. The EFO term Biliary atresia was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
MM Garcia-Barceló, MY Yeung, XP Miao, CS Tang, G Cheng, G Chen, MT So, ES Ngan, VC Lui, Y Chen, XL Liu, KJ Hui, L Li, WH Guo, XB Sun, JF Tou, KW Chan, XZ Wu, YQ Song, D Chan, K Cheung, PH Chung, KK Wong, PC Sham, SS Cherny, PK Tam
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Age-related macular degeneration. The EFO term glaucoma, age-related macular degeneration was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
TE Scheetz, JH Fingert, K Wang, MH Kuehn, KL Knudtson, WL Alward, HC Boldt, SR Russell, JC Folk, TL Casavant, TA Braun, AF Clark, EM Stone, VC Sheffield
545 differentially expressed genes in Cluster 2 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
530 differentially expressed genes in Cluster 5 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
498 differentially expressed genes in Cluster 6 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
510 differentially expressed genes in Cluster 7 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
543 differentially expressed genes in Cluster 10 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
536 differentially expressed genes in Cluster 12 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
534 differentially expressed genes in Cluster 21 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
561 differentially expressed genes in Cluster 24 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
512 differentially expressed genes in Cluster 29 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
452 differentially expressed genes in Cluster 32 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
426 differentially expressed genes in Cluster 34 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
498 differentially expressed genes in Cluster 35 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S6. From table legend: "This analysis was performed (per cluster) without separating male and female samples. Entries that are greyed out have p_val_adj < 0.05. “Avg_diff” is conditionally formatted to indicate up- and down-regulation of expression in cocaine compared to sucrose (red: up-regulated, green: down-regulated and yellow: no difference). The “Names” sheet at the end of file was used to convert GeneIDs to FlybaseIDs and Gene Symbols. p_val: raw p-value from the differential expression analysis for the given gene in the corresponding cluster. avg_diff: the difference in the loge transformed average expression of the given gene in the corresponding cluster (sheet) between the two conditions (cocaine compared to sucrose). Values above 0 indicate up-regulation of expression due to cocaine, and likewise, values below zero represent downregulation of expression due to cocaine. pct.1: percentage of cells expressing the gene in the cluster from the first condition (cocaine). pct.2: percentage of cells expressing the gene in the cluster from the second condition (sucrose). p_val_adj: Benjamini-Hochberg FDR adjusted p-value." Values presented are p-adjusted values. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
551 differentially expressed genes in Cluster 0 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S7. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
566 differentially expressed genes in Cluster 2 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S7. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
545 differentially expressed genes in Cluster 5 in the Canton S (B) fruit fly following cocaine administration. Gene expression was measured via sequencing using an S1 flow cell with a NovaSeq Data taken from Supplemental Table S7. Data available at GEO with accession number GSE152495.
Authors:
Brandon M Baker, Sneha S Mokashi, Vijay Shankar, Jeffrey S Hatfield, Rachel C Hannah, Trudy F C Mackay, Robert R H Anholt
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