List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Urate levels (BMI interaction). The EFO term urate measurement, body mass index was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JE Huffman, E Albrecht, A Teumer, M Mangino, K Kapur, T Johnson, Z Kutalik, N Pirastu, G Pistis, LM Lopez, T Haller, P Salo, A Goel, M Li, T Tanaka, A Dehghan, D Ruggiero, G Malerba, AV Smith, IM Nolte, L Portas, A Phipps-Green, L Boteva, P Navarro, A Johansson, AA Hicks, O Polasek, T Esko, JF Peden, SE Harris, F Murgia, SH Wild, A Tenesa, A Tin, E Mihailov, A Grotevendt, GK Gislason, J Coresh, P D'Adamo, S Ulivi, P Vollenweider, G Waeber, S Campbell, I Kolcic, K Fisher, M Viigimaa, JE Metter, C Masciullo, E Trabetti, C Bombieri, R Sorice, A Döring, E Reischl, K Strauch, A Hofman, AG Uitterlinden, M Waldenberger, HE Wichmann, G Davies, AJ Gow, N Dalbeth, L Stamp, JH Smit, M Kirin, R Nagaraja, M Nauck, C Schurmann, K Budde, SM Farrington, E Theodoratou, A Jula, V Salomaa, C Sala, C Hengstenberg, M Burnier, R Mägi, N Klopp, S Kloiber, S Schipf, S Ripatti, S Cabras, N Soranzo, G Homuth, T Nutile, PB Munroe, N Hastie, H Campbell, I Rudan, C Cabrera, C Haley, OH Franco, TR Merriman, V Gudnason, M Pirastu, BW Penninx, H Snieder, A Metspalu, M Ciullo, PP Pramstaller, CM van Duijn, L Ferrucci, G Gambaro, IJ Deary, MG Dunlop, JF Wilson, P Gasparini, U Gyllensten, TD Spector, AF Wright, C Hayward, H Watkins, M Perola, M Bochud, WH Kao, M Caulfield, D Toniolo, H Völzke, C Gieger, A Köttgen, V Vitart
GWAS: obese body mass index status, urate measurement
Description:
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Urate levels in obese individuals. The EFO term obese body mass index status, urate measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JE Huffman, E Albrecht, A Teumer, M Mangino, K Kapur, T Johnson, Z Kutalik, N Pirastu, G Pistis, LM Lopez, T Haller, P Salo, A Goel, M Li, T Tanaka, A Dehghan, D Ruggiero, G Malerba, AV Smith, IM Nolte, L Portas, A Phipps-Green, L Boteva, P Navarro, A Johansson, AA Hicks, O Polasek, T Esko, JF Peden, SE Harris, F Murgia, SH Wild, A Tenesa, A Tin, E Mihailov, A Grotevendt, GK Gislason, J Coresh, P D'Adamo, S Ulivi, P Vollenweider, G Waeber, S Campbell, I Kolcic, K Fisher, M Viigimaa, JE Metter, C Masciullo, E Trabetti, C Bombieri, R Sorice, A Döring, E Reischl, K Strauch, A Hofman, AG Uitterlinden, M Waldenberger, HE Wichmann, G Davies, AJ Gow, N Dalbeth, L Stamp, JH Smit, M Kirin, R Nagaraja, M Nauck, C Schurmann, K Budde, SM Farrington, E Theodoratou, A Jula, V Salomaa, C Sala, C Hengstenberg, M Burnier, R Mägi, N Klopp, S Kloiber, S Schipf, S Ripatti, S Cabras, N Soranzo, G Homuth, T Nutile, PB Munroe, N Hastie, H Campbell, I Rudan, C Cabrera, C Haley, OH Franco, TR Merriman, V Gudnason, M Pirastu, BW Penninx, H Snieder, A Metspalu, M Ciullo, PP Pramstaller, CM van Duijn, L Ferrucci, G Gambaro, IJ Deary, MG Dunlop, JF Wilson, P Gasparini, U Gyllensten, TD Spector, AF Wright, C Hayward, H Watkins, M Perola, M Bochud, WH Kao, M Caulfield, D Toniolo, H Völzke, C Gieger, A Köttgen, V Vitart
GWAS: urate measurement, overweight body mass index status
Description:
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Urate levels in overweight individuals. The EFO term urate measurement, overweight body mass index status was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JE Huffman, E Albrecht, A Teumer, M Mangino, K Kapur, T Johnson, Z Kutalik, N Pirastu, G Pistis, LM Lopez, T Haller, P Salo, A Goel, M Li, T Tanaka, A Dehghan, D Ruggiero, G Malerba, AV Smith, IM Nolte, L Portas, A Phipps-Green, L Boteva, P Navarro, A Johansson, AA Hicks, O Polasek, T Esko, JF Peden, SE Harris, F Murgia, SH Wild, A Tenesa, A Tin, E Mihailov, A Grotevendt, GK Gislason, J Coresh, P D'Adamo, S Ulivi, P Vollenweider, G Waeber, S Campbell, I Kolcic, K Fisher, M Viigimaa, JE Metter, C Masciullo, E Trabetti, C Bombieri, R Sorice, A Döring, E Reischl, K Strauch, A Hofman, AG Uitterlinden, M Waldenberger, HE Wichmann, G Davies, AJ Gow, N Dalbeth, L Stamp, JH Smit, M Kirin, R Nagaraja, M Nauck, C Schurmann, K Budde, SM Farrington, E Theodoratou, A Jula, V Salomaa, C Sala, C Hengstenberg, M Burnier, R Mägi, N Klopp, S Kloiber, S Schipf, S Ripatti, S Cabras, N Soranzo, G Homuth, T Nutile, PB Munroe, N Hastie, H Campbell, I Rudan, C Cabrera, C Haley, OH Franco, TR Merriman, V Gudnason, M Pirastu, BW Penninx, H Snieder, A Metspalu, M Ciullo, PP Pramstaller, CM van Duijn, L Ferrucci, G Gambaro, IJ Deary, MG Dunlop, JF Wilson, P Gasparini, U Gyllensten, TD Spector, AF Wright, C Hayward, H Watkins, M Perola, M Bochud, WH Kao, M Caulfield, D Toniolo, H Völzke, C Gieger, A Köttgen, V Vitart
GWAS: urate measurement, underweight body mass index status
Description:
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Urate levels in lean individuals. The EFO term urate measurement, underweight body mass index status was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JE Huffman, E Albrecht, A Teumer, M Mangino, K Kapur, T Johnson, Z Kutalik, N Pirastu, G Pistis, LM Lopez, T Haller, P Salo, A Goel, M Li, T Tanaka, A Dehghan, D Ruggiero, G Malerba, AV Smith, IM Nolte, L Portas, A Phipps-Green, L Boteva, P Navarro, A Johansson, AA Hicks, O Polasek, T Esko, JF Peden, SE Harris, F Murgia, SH Wild, A Tenesa, A Tin, E Mihailov, A Grotevendt, GK Gislason, J Coresh, P D'Adamo, S Ulivi, P Vollenweider, G Waeber, S Campbell, I Kolcic, K Fisher, M Viigimaa, JE Metter, C Masciullo, E Trabetti, C Bombieri, R Sorice, A Döring, E Reischl, K Strauch, A Hofman, AG Uitterlinden, M Waldenberger, HE Wichmann, G Davies, AJ Gow, N Dalbeth, L Stamp, JH Smit, M Kirin, R Nagaraja, M Nauck, C Schurmann, K Budde, SM Farrington, E Theodoratou, A Jula, V Salomaa, C Sala, C Hengstenberg, M Burnier, R Mägi, N Klopp, S Kloiber, S Schipf, S Ripatti, S Cabras, N Soranzo, G Homuth, T Nutile, PB Munroe, N Hastie, H Campbell, I Rudan, C Cabrera, C Haley, OH Franco, TR Merriman, V Gudnason, M Pirastu, BW Penninx, H Snieder, A Metspalu, M Ciullo, PP Pramstaller, CM van Duijn, L Ferrucci, G Gambaro, IJ Deary, MG Dunlop, JF Wilson, P Gasparini, U Gyllensten, TD Spector, AF Wright, C Hayward, H Watkins, M Perola, M Bochud, WH Kao, M Caulfield, D Toniolo, H Völzke, C Gieger, A Köttgen, V Vitart
Hippocampus Gene Expression Correlates for C1VCOUNT15 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The C1VCOUNT15 measures Open Field rears 0-15 min post cocaine under the domain Cocaine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for C1VCOUNT30 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The C1VCOUNT30 measures Open Field rears 15-30 min post cocaine under the domain Cocaine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for C2VCOUNT30 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The C2VCOUNT30 measures Open Field rears 15-30 min post 2nd cocaine under the domain Cocaine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Whole Brain Gene Expression Correlates for HAND_4HOURS measured in BXD RI Females & Males obtained using INIA Brain mRNA M430 (Jun06) RMA. The HAND_4HOURS measures Handling induced convulsions 4 hrs after ethanol under the domain Ethanol HIC. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Whole Brain Gene Expression Correlates for HAND_4HOURS measured in BXD RI Males obtained using INIA Brain mRNA M430 (Jun06) RMA. The HAND_4HOURS measures Handling induced convulsions 4 hrs after ethanol under the domain Ethanol HIC. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
A list of genes whose transcript abundance in the PFC changed significantly 4 hours after an acute dose of ethanol (1.8 g/kg). This list was generated using Fisher's Combined Probability test to analyze saline vs ethanol S-scores across B6 and D2 inbred strains (n=3) and 27 BXD RI lines (n=1). Statistical significance was determined using 1,000 permutations of S-score data and selecting for probe-sets with q-values < 0.05. Aaron Wolen 5-26-10.
Authors:
Wolen AR, Phillips CA, Langston MA, Putman AH, Vorster PJ, Bruce NA, York TP, Williams RW, Miles MF
Genes associated with Homo sapiens that interact with the MeSH term 'entinostat' (C118739). Incorporates data from 11 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Arsenic' (D001151). Incorporates data from 87 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term '(6-(4-(2-piperidin-1-ylethoxy)phenyl))-3-pyridin-4-ylpyrazolo(1,5-a)pyrimidine' (C516138). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Thimerosal' (D013849). Incorporates data from 20 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Tretinoin' (D014212). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'p-Chloromercuribenzoic Acid' (D020245). Incorporates data from 96 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'panobinostat' (C496932). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Particulate Matter' (D052638). Incorporates data from 6 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'sodium arsenite' (C017947). Incorporates data from 15 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'butyraldehyde' (C018475). Incorporates data from 7 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term '4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide' (C459179). Incorporates data from 9 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'belinostat' (C487081). Incorporates data from 4 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Valproic Acid' (D014635). Incorporates data from 1238 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Nicotine' (D009538). Incorporates data from 8 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
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