This gene set describes genes that are up-regulated by the host transcriptional response to SARS-CoV-2 infection in human lung adenocarcinoma epithelial cells derived from pleural effusion (Calu3). COVID-19 is the disease caused by SARS-CoV-2 virus. We define up-regulated as those genes that show a (log 2 fold change) of >=2. These data are from the supplementary materials associated with the publication.
Authors:
Daniel Blanco-Melo, Benjamin E Nilsson-Payant, Wen-Chun Liu, Skyler Uhl, Daisy Hoagland, Rasmus Møller, Tristan X Jordan, Kohei Oishi, Maryline Panis, David Sachs, Taia T Wang, Robert E Schwartz, Jean K Lim, Randy A Albrecht, Benjamin R tenOever
Genes associated with Homo sapiens that interact with the MeSH term 'N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine' (C044387). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
QTL associated with non-insulin-dependent diabetes mellitus 2 in NSY. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (60343804)
Genes with particular expression in the Prelimbic area, layer 2. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Orbital area, ventrolateral part, layer 2/3. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Orbital area, lateral part, layer 2/3. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Infralimbic area, layer 2/3. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Orbital area, medial part, layer 2/3. Data represent fold expression difference in structure versus grey matter average expression.
Genes with particular expression in the Frontal pole, layer 2/3. Data represent fold expression difference in structure versus grey matter average expression.
Genes associated with Homo sapiens that interact with the MeSH term '2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one' (C093973). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term '2-amino-4-phenylbutyric acid' (C014328). Incorporates data from 1822 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'octa-2,4,6-trienoic acid' (C062198). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
QTL associated with activity-distance traveled 2. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (21685340)
QTL associated with estradiol regulated response QTL 2. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (32779113)
Authors:
Roper RJ, Griffith JS, Lyttle CR, Doerge RW, McNabb AW, Broadbent RE, Teuscher C
QTL associated with induction of brown adipocytes 5. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (37920888)
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