List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was B cell non-Hodgkin lymphoma. The EFO term lymphoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
DE Tan, JN Foo, JX Bei, J Chang, R Peng, X Zheng, L Wei, Y Huang, WY Lim, J Li, Q Cui, SH Chew, RP Ebstein, P Kuperan, ST Lim, M Tao, SH Tan, A Wong, GC Wong, SY Tan, SB Ng, YX Zeng, CC Khor, D Lin, AL Seow, WH Jia, J Liu
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Self-reported allergy. The EFO term allergy was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
DA Hinds, G McMahon, AK Kiefer, CB Do, N Eriksson, DM Evans, B St Pourcain, SM Ring, JL Mountain, U Francke, G Davey-Smith, NJ Timpson, JY Tung
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Allergic sensitization. The EFO term allergic sensitization measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
K Bønnelykke, MC Matheson, TH Pers, R Granell, DP Strachan, AC Alves, A Linneberg, JA Curtin, NM Warrington, M Standl, M Kerkhof, I Jonsdottir, BK Bukvic, M Kaakinen, P Sleimann, G Thorleifsson, U Thorsteinsdottir, K Schramm, S Baltic, E Kreiner-Møller, A Simpson, B St Pourcain, L Coin, J Hui, EH Walters, CM Tiesler, DL Duffy, G Jones, SM Ring, WL McArdle, L Price, CF Robertson, J Pekkanen, CS Tang, E Thiering, GW Montgomery, AL Hartikainen, SC Dharmage, LL Husemoen, C Herder, JP Kemp, P Elliot, A James, M Waldenberger, MJ Abramson, BP Fairfax, JC Knight, R Gupta, PJ Thompson, P Holt, P Sly, JN Hirschhorn, M Blekic, S Weidinger, H Hakonarsson, K Stefansson, J Heinrich, DS Postma, A Custovic, CE Pennell, MR Jarvelin, GH Koppelman, N Timpson, MA Ferreira, H Bisgaard, AJ Henderson
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Chronic lymphocytic leukemia. The EFO term chronic lymphocytic leukemia was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
SI Berndt, NJ Camp, CF Skibola, J Vijai, Z Wang, J Gu, A Nieters, RS Kelly, KE Smedby, A Monnereau, W Cozen, A Cox, SS Wang, Q Lan, LR Teras, M Machado, M Yeager, AR Brooks-Wilson, P Hartge, MP Purdue, BM Birmann, CM Vajdic, P Cocco, Y Zhang, GG Giles, A Zeleniuch-Jacquotte, C Lawrence, R Montalvan, L Burdett, A Hutchinson, Y Ye, TG Call, TD Shanafelt, AJ Novak, NE Kay, M Liebow, JM Cunningham, C Allmer, H Hjalgrim, HO Adami, M Melbye, B Glimelius, ET Chang, M Glenn, K Curtin, LA Cannon-Albright, WR Diver, BK Link, GJ Weiner, L Conde, PM Bracci, J Riby, DK Arnett, D Zhi, JM Leach, EA Holly, RD Jackson, LF Tinker, Y Benavente, N Sala, D Casabonne, N Becker, P Boffetta, P Brennan, L Foretova, M Maynadie, J McKay, A Staines, KG Chaffee, SJ Achenbach, CM Vachon, LR Goldin, SS Strom, JF Leis, JB Weinberg, NE Caporaso, AD Norman, AJ De Roos, LM Morton, RK Severson, E Riboli, P Vineis, R Kaaks, G Masala, E Weiderpass, MD Chirlaque, RC Vermeulen, RC Travis, MC Southey, RL Milne, D Albanes, J Virtamo, S Weinstein, J Clavel, T Zheng, TR Holford, DJ Villano, A Maria, JJ Spinelli, RD Gascoyne, JM Connors, KA Bertrand, E Giovannucci, P Kraft, A Kricker, J Turner, MG Ennas, GM Ferri, L Miligi, L Liang, B Ma, J Huang, S Crouch, JH Park, N Chatterjee, KE North, JA Snowden, J Wright, JF Fraumeni, K Offit, X Wu, S de Sanjose, JR Cerhan, SJ Chanock, N Rothman, SL Slager
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Follicular lymphoma. The EFO term neoplasm of mature B-cells was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
CF Skibola, SI Berndt, J Vijai, L Conde, Z Wang, M Yeager, PI de Bakker, BM Birmann, CM Vajdic, JN Foo, PM Bracci, RC Vermeulen, SL Slager, S de Sanjose, SS Wang, MS Linet, G Salles, Q Lan, G Severi, H Hjalgrim, T Lightfoot, M Melbye, J Gu, H Ghesquières, BK Link, LM Morton, EA Holly, A Smith, LF Tinker, LR Teras, A Kricker, N Becker, MP Purdue, JJ Spinelli, Y Zhang, GG Giles, P Vineis, A Monnereau, KA Bertrand, D Albanes, A Zeleniuch-Jacquotte, A Gabbas, CC Chung, L Burdett, A Hutchinson, C Lawrence, R Montalvan, L Liang, J Huang, B Ma, J Liu, HO Adami, B Glimelius, Y Ye, GS Nowakowski, A Dogan, CA Thompson, TM Habermann, AJ Novak, M Liebow, TE Witzig, GJ Weiner, M Schenk, P Hartge, AJ De Roos, W Cozen, D Zhi, NK Akers, J Riby, MT Smith, M Lacher, DJ Villano, A Maria, E Roman, E Kane, RD Jackson, KE North, WR Diver, J Turner, BK Armstrong, Y Benavente, P Boffetta, P Brennan, L Foretova, M Maynadie, A Staines, J McKay, AR Brooks-Wilson, T Zheng, TR Holford, S Chamosa, R Kaaks, RS Kelly, B Ohlsson, RC Travis, E Weiderpass, J Clavel, E Giovannucci, P Kraft, J Virtamo, P Mazza, P Cocco, MG Ennas, BC Chiu, JF Fraumeni, A Nieters, K Offit, X Wu, JR Cerhan, KE Smedby, SJ Chanock, N Rothman
The chromosome 1 region has peak markers with of LOD of 3.45 and 3.46 for Alcoholism gender age and constraint as D1S2878 (165403366) D1S196 (167604128). Arbitrary interval of 25 MBp on each side of the peak makers was uploaded.
Authors:
Hill SY, Shen S, Zezza N, Hoffman EK, Perlin M, Allan W
Data from GEO GSE194368 and analyzed using GEO2R, only top gene shown. Authors identified transcriptional adaptations of GR signaling in the amygdala of humans with OUD. Thus, GRs, their coregulators and downstream systems may represent viable therapeutic targets to treat the “stress side” of OUD.
Authors:
Stephanie A Carmack, Janaina C M Vendruscolo, M Adrienne McGinn, Jorge Miranda-Barrientos, Vez Repunte-Canonigo, Gabriel D Bosse, Daniele Mercatelli, Federico M Giorgi, Yu Fu, Anthony J Hinrich, Francine M Jodelka, Karen Ling, Robert O Messing, Randall T Peterson, Frank Rigo, Scott Edwards, Pietro P Sanna, Marisela Morales, Michelle L Hastings, George F Koob, Leandro F Vendruscolo
Genes associated with Homo sapiens that interact with the MeSH term 'Valproic Acid' (D014635). Incorporates data from 1238 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Visceral adipose tissue/subcutaneous adipose tissue ratio. The EFO term visceral:subcutaneous adipose tissue ratio was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
CS Fox, Y Liu, CC White, M Feitosa, AV Smith, N Heard-Costa, K Lohman, AD Johnson, MC Foster, DM Greenawalt, P Griffin, J Ding, AB Newman, F Tylavsky, I Miljkovic, SB Kritchevsky, L Launer, M Garcia, G Eiriksdottir, JJ Carr, V Gudnason, TB Harris, LA Cupples, IB Borecki
GWAS: visceral adipose tissue measurement, body mass index
Description:
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Visceral adipose tissue adjusted for BMI. The EFO term visceral adipose tissue measurement, body mass index was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
CS Fox, Y Liu, CC White, M Feitosa, AV Smith, N Heard-Costa, K Lohman, AD Johnson, MC Foster, DM Greenawalt, P Griffin, J Ding, AB Newman, F Tylavsky, I Miljkovic, SB Kritchevsky, L Launer, M Garcia, G Eiriksdottir, JJ Carr, V Gudnason, TB Harris, LA Cupples, IB Borecki
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Type 2 diabetes (young onset) and obesity. The EFO term type II diabetes mellitus, obesity was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
RC Ma, HM Lee, VK Lam, CH Tam, JS Ho, HL Zhao, J Guan, AP Kong, E Lau, G Zhang, A Luk, Y Wang, SK Tsui, TF Chan, C Hu, WP Jia, KS Park, HK Lee, H Furuta, K Nanjo, ES Tai, DP Ng, NL Tang, J Woo, PC Leung, H Xue, J Wong, PS Leung, TC Lau, PC Tong, G Xu, MC Ng, WY So, JC Chan
Differential gene expression between CS13 and CS22 - Log2FC
Description:
Human craniofacial tissues were collected from the Joint MRC/Wellcome Trust Human Developmental Biology (HDBR). Donations of tissue to HDBR are made under-informed ethical consent with Research Tissue Bank ethical approval by women undergoing termination of pregnancy. Gene expression profiles were generated from multiple biological replicates of primary craniofacial (CF) tissue from Carnegie Stages (CS) of the embryonic period, CS13, CS14, CS17, CS17, and CS22. Here the differential expression comparison between CS13 and CS22 is shown. Gene expressions values with log to the base 2, FC are presented with P-Adj <0.05. UBERON:0015789, cranial or facial muscle.
Authors:
Tara N Yankee, Sungryong Oh, Emma Wentworth Winchester, Andrea Wilderman, Kelsey Robinson, Tia Gordon, Jill A Rosenfeld, Jennifer VanOudenhove, Daryl A Scott, Elizabeth J Leslie, Justin Cotney
Differential gene expression between CS13 and CS22 - Adj-P value
Description:
Human craniofacial tissues were collected from the Joint MRC/Wellcome Trust Human Developmental Biology (HDBR). Donations of tissue to HDBR are made under-informed ethical consent with Research Tissue Bank ethical approval by women undergoing termination of pregnancy. Gene expression profiles were generated from multiple biological replicates of primary craniofacial (CF) tissue from Carnegie Stages (CS) of the embryonic period, CS13, CS14, CS17, CS17 and CS22. Here the differential expression comparison between CS13 and CS22 is shown. Gene expressions values, Ensembl Gene ids and the corresponding Adjusted P value are presented. UBERON:0015789, cranial or facial muscle.
Authors:
Tara N Yankee, Sungryong Oh, Emma Wentworth Winchester, Andrea Wilderman, Kelsey Robinson, Tia Gordon, Jill A Rosenfeld, Jennifer VanOudenhove, Daryl A Scott, Elizabeth J Leslie, Justin Cotney
Differential gene expression between CS14 and CS22 - Adj-P value
Description:
Human craniofacial tissues were collected from the Joint MRC/Wellcome Trust Human Developmental Biology (HDBR). Donations of tissue to HDBR are made under-informed ethical consent with Research Tissue Bank ethical approval by women undergoing termination of pregnancy. Gene expression profiles were generated from multiple biological replicates of primary craniofacial (CF) tissue from Carnegie Stages (CS) of the embryonic period, CS13, CS14, CS17, CS17 and CS22. Here the differential expression comparison between CS14 and CS22 is shown. Gene expressions values, Ensembl Gene ids and the corresponding Adjusted P value are presented. UBERON:0015789, cranial or facial muscle.
Authors:
Tara N Yankee, Sungryong Oh, Emma Wentworth Winchester, Andrea Wilderman, Kelsey Robinson, Tia Gordon, Jill A Rosenfeld, Jennifer VanOudenhove, Daryl A Scott, Elizabeth J Leslie, Justin Cotney
Genome-wide association studies are conducted of two human cohorts, one group demonstrating nicotine dependence and another successfully quitting smoking. Study shows that some genetic components associated with the ability to quit overlap while many do not overlap. To perform the study, DNA samples were obtained from NIH volunteers and the allelic frequencies of the samples were analyzed using Affymetrix array analysis. This gene set comprises 290 genes associated with nicotine dependence.
Authors:
Drgon T, Montoya I, Johnson C, Liu QR, Walther D, Hamer D, Uhl GR
Gene set has 67 genes associated with nicotine abstinence. Backgound: In this study, genome-wide association studies are conducted for two human cohorts, one group demonstrating nicotine dependence, and another that successfully quit smoking. The study shows that some genetic components associated with ability to quit overlap while many do not. To perform the study, DNA samples were obtained from NIH volunteers and allelic frequencies of the samples were analyzed using Affymetrix array analysis. Table S2.
Authors:
Drgon T, Montoya I, Johnson C, Liu QR, Walther D, Hamer D, Uhl GR
Cerebellum Gene Expression Correlates for HARGREAVES_MEANBOTH measured in BXD RI Females obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The HARGREAVES_MEANBOTH measures Thermal Nociception Hargreaves' Test under the domain Pain. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Whole Brain Gene Expression Correlates for TAILCLIP_LAT_SEC measured in BXD RI Males obtained using INIA Brain mRNA M430 (Jun06) RMA. The TAILCLIP_LAT_SEC measures Mechanical Nociception - Tail Clip Test under the domain Pain. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for LM_SUPPRESSION measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The LM_SUPPRESSION measures Cue Conditioning - Activity suppression after 3rd tone/shock pairing under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Add Selected GeneSets to Project(s)
Warning: You are not signed in. Adding these genesets to a project will create a guest account for you.
Guest accounts are temporary, and will be removed within 24 hours of creation. Guest accounts can be registered as full accounts, but you cannot associate a guest account with an existing account.
If you already have an account, you should sign into that account before proceeding.