GWAS: diabetes mellitus, urinary albumin to creatinine ratio
Description:
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Urinary albumin-to-creatinine ratio in diabetes. The EFO term diabetes mellitus, urinary albumin to creatinine ratio was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
A Teumer, A Tin, R Sorice, M Gorski, NC Yeo, AY Chu, M Li, Y Li, V Mijatovic, YA Ko, D Taliun, A Luciani, MH Chen, Q Yang, MC Foster, M Olden, LT Hiraki, BO Tayo, C Fuchsberger, AK Dieffenbach, AR Shuldiner, AV Smith, AM Zappa, A Lupo, B Kollerits, B Ponte, B Stengel, BK Krämer, B Paulweber, BD Mitchell, C Hayward, C Helmer, C Meisinger, C Gieger, CM Shaffer, C Müller, C Langenberg, D Ackermann, D Siscovick, E Boerwinkle, F Kronenberg, GB Ehret, G Homuth, G Waeber, G Navis, G Gambaro, G Malerba, G Eiriksdottir, G Li, HE Wichmann, H Grallert, H Wallaschofski, H Völzke, H Brenner, H Kramer, I Mateo Leach, I Rudan, HL Hillege, JS Beckmann, JC Lambert, J Luan, JH Zhao, J Chalmers, J Coresh, JC Denny, K Butterbach, LJ Launer, L Ferrucci, L Kedenko, M Haun, M Metzger, M Woodward, MJ Hoffman, M Nauck, M Waldenberger, M Pruijm, M Bochud, M Rheinberger, N Verweij, NJ Wareham, N Endlich, N Soranzo, O Polasek, P van der Harst, PP Pramstaller, P Vollenweider, PS Wild, RT Gansevoort, R Rettig, R Biffar, RJ Carroll, R Katz, RJ Loos, SJ Hwang, S Coassin, S Bergmann, SE Rosas, S Stracke, TB Harris, T Corre, T Zeller, T Illig, T Aspelund, T Tanaka, U Lendeckel, U Völker, V Gudnason, V Chouraki, W Koenig, Z Kutalik, JR O'Connell, A Parsa, IM Heid, AD Paterson, IH de Boer, O Devuyst, J Lazar, K Endlich, K Susztak, J Tremblay, P Hamet, HJ Jacob, CA Böger, CS Fox, C Pattaro, A Köttgen
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Urinary albumin-to-creatinine ratio. The EFO term urinary albumin to creatinine ratio was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
A Teumer, A Tin, R Sorice, M Gorski, NC Yeo, AY Chu, M Li, Y Li, V Mijatovic, YA Ko, D Taliun, A Luciani, MH Chen, Q Yang, MC Foster, M Olden, LT Hiraki, BO Tayo, C Fuchsberger, AK Dieffenbach, AR Shuldiner, AV Smith, AM Zappa, A Lupo, B Kollerits, B Ponte, B Stengel, BK Krämer, B Paulweber, BD Mitchell, C Hayward, C Helmer, C Meisinger, C Gieger, CM Shaffer, C Müller, C Langenberg, D Ackermann, D Siscovick, E Boerwinkle, F Kronenberg, GB Ehret, G Homuth, G Waeber, G Navis, G Gambaro, G Malerba, G Eiriksdottir, G Li, HE Wichmann, H Grallert, H Wallaschofski, H Völzke, H Brenner, H Kramer, I Mateo Leach, I Rudan, HL Hillege, JS Beckmann, JC Lambert, J Luan, JH Zhao, J Chalmers, J Coresh, JC Denny, K Butterbach, LJ Launer, L Ferrucci, L Kedenko, M Haun, M Metzger, M Woodward, MJ Hoffman, M Nauck, M Waldenberger, M Pruijm, M Bochud, M Rheinberger, N Verweij, NJ Wareham, N Endlich, N Soranzo, O Polasek, P van der Harst, PP Pramstaller, P Vollenweider, PS Wild, RT Gansevoort, R Rettig, R Biffar, RJ Carroll, R Katz, RJ Loos, SJ Hwang, S Coassin, S Bergmann, SE Rosas, S Stracke, TB Harris, T Corre, T Zeller, T Illig, T Aspelund, T Tanaka, U Lendeckel, U Völker, V Gudnason, V Chouraki, W Koenig, Z Kutalik, JR O'Connell, A Parsa, IM Heid, AD Paterson, IH de Boer, O Devuyst, J Lazar, K Endlich, K Susztak, J Tremblay, P Hamet, HJ Jacob, CA Böger, CS Fox, C Pattaro, A Köttgen
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Microalbuminuria. The EFO term Microalbuminuria was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
A Teumer, A Tin, R Sorice, M Gorski, NC Yeo, AY Chu, M Li, Y Li, V Mijatovic, YA Ko, D Taliun, A Luciani, MH Chen, Q Yang, MC Foster, M Olden, LT Hiraki, BO Tayo, C Fuchsberger, AK Dieffenbach, AR Shuldiner, AV Smith, AM Zappa, A Lupo, B Kollerits, B Ponte, B Stengel, BK Krämer, B Paulweber, BD Mitchell, C Hayward, C Helmer, C Meisinger, C Gieger, CM Shaffer, C Müller, C Langenberg, D Ackermann, D Siscovick, E Boerwinkle, F Kronenberg, GB Ehret, G Homuth, G Waeber, G Navis, G Gambaro, G Malerba, G Eiriksdottir, G Li, HE Wichmann, H Grallert, H Wallaschofski, H Völzke, H Brenner, H Kramer, I Mateo Leach, I Rudan, HL Hillege, JS Beckmann, JC Lambert, J Luan, JH Zhao, J Chalmers, J Coresh, JC Denny, K Butterbach, LJ Launer, L Ferrucci, L Kedenko, M Haun, M Metzger, M Woodward, MJ Hoffman, M Nauck, M Waldenberger, M Pruijm, M Bochud, M Rheinberger, N Verweij, NJ Wareham, N Endlich, N Soranzo, O Polasek, P van der Harst, PP Pramstaller, P Vollenweider, PS Wild, RT Gansevoort, R Rettig, R Biffar, RJ Carroll, R Katz, RJ Loos, SJ Hwang, S Coassin, S Bergmann, SE Rosas, S Stracke, TB Harris, T Corre, T Zeller, T Illig, T Aspelund, T Tanaka, U Lendeckel, U Völker, V Gudnason, V Chouraki, W Koenig, Z Kutalik, JR O'Connell, A Parsa, IM Heid, AD Paterson, IH de Boer, O Devuyst, J Lazar, K Endlich, K Susztak, J Tremblay, P Hamet, HJ Jacob, CA Böger, CS Fox, C Pattaro, A Köttgen
Striatum Gene Expression Correlates for NEPCOUNT30 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The NEPCOUNT30 measures Novel environment locomotion (activity beam breaks) 15-30 min in the periphery under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for NEPCOUNT30 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The NEPCOUNT30 measures Novel environment locomotion (activity beam breaks) 15-30 min in the periphery under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Striatum Gene Expression Correlates for NEPCOUNT30 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The NEPCOUNT30 measures Novel environment locomotion (activity beam breaks) 15-30 min in the periphery under the domain Cocaine. The correlates were thresholded at a p-value of less than 0.001.
Striatum Gene Expression Correlates for NEPDIST30 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The NEPDIST30 measures Novel environment distance (cm) travelled min 15-30 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for NEPDIST30 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The NEPDIST30 measures Novel environment distance (cm) travelled min 15-30 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Striatum Gene Expression Correlates for NEPDIST30 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The NEPDIST30 measures Novel environment distance (cm) travelled min 15-30 under the domain Cocaine. The correlates were thresholded at a p-value of less than 0.001.
Renthal W, Kumar A, Xiao G, Wilkinson M, Covington HE 3rd, Maze I, Sikder D, Robison AJ, LaPlant Q, Dietz DM, Russo SJ, Vialou V, Chakravarty S, Kodadek TJ, Stack A, Kabbaj M, Nestler EJ
QTL for alcohol consumption on Chr1 at D1Mit167 (21.28 Mbp , Build 37)
Description:
alcohol consumption spans 0.00 - 46.28 Mbp (NCBI Build 37) on Chr1. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Authors:
Vadasz C, Saito M, Gyetvai B, Mikics E, Vadasz C 2nd
QTL for alcohol preference locus on Chr1 at D1Mit295 (22.09 Mbp , Build 37)
Description:
alcohol preference locus spans 0.00 - 47.09 Mbp (NCBI Build 37) on Chr1. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for alcohol preference locus on Chr1 at D1Mit165 (22.12 Mbp , Build 37)
Description:
alcohol preference locus spans 0.00 - 47.12 Mbp (NCBI Build 37) on Chr1. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for METH responses for home cage activity on Chr1 at D1Mit1 (22.85 Mbp , Build 37)
Description:
METH responses for home cage activity spans 0.00 - 47.85 Mbp (NCBI Build 37) on Chr1. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for morphine antinociception on Chr1 at D1Mit67 (22.97 Mbp , Build 37)
Description:
morphine antinociception spans 0.00 - 47.97 Mbp (NCBI Build 37) on Chr1. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Authors:
Bergeson SE, Helms ML, O\'Toole LA, Jarvis MW, Hain HS, Mogil JS, Belknap JK
QTL for ethanol withdrawal on Chr1 at D1Mit122 (42.42 Mbp , Build 37)
Description:
ethanol withdrawal spans 17.42 - 67.42 Mbp (NCBI Build 37) on Chr1. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Genes associated with Homo sapiens that interact with the MeSH term 'nickel sulfate' (C029938). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Ovis aries that interact with the MeSH term 'Progesterone' (D011374). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'potassium chromate(VI)' (C027373). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'sodium arsenite' (C017947). Incorporates data from 15 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'butyraldehyde' (C018475). Incorporates data from 7 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Authors:
None
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