List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Myeloproliferative neoplasms. The EFO term myeloproliferative disorder was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
W Tapper, AV Jones, R Kralovics, AS Harutyunyan, K Zoi, W Leung, AL Godfrey, P Guglielmelli, A Callaway, D Ward, P Aranaz, HE White, K Waghorn, F Lin, A Chase, EJ Baxter, C Maclean, J Nangalia, E Chen, P Evans, M Short, A Jack, L Wallis, D Oscier, AS Duncombe, A Schuh, AJ Mead, M Griffiths, J Ewing, RE Gale, S Schnittger, T Haferlach, F Stegelmann, K Döhner, H Grallert, K Strauch, T Tanaka, S Bandinelli, A Giannopoulos, L Pieri, C Mannarelli, H Gisslinger, G Barosi, M Cazzola, A Reiter, C Harrison, P Campbell, AR Green, A Vannucchi, NC Cross
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Glycated hemoglobin levels. The EFO term A1C measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
P Chen, F Takeuchi, JY Lee, H Li, JY Wu, J Liang, J Long, Y Tabara, MO Goodarzi, MA Pereira, YJ Kim, MJ Go, DO Stram, E Vithana, CC Khor, J Liu, J Liao, X Ye, Y Wang, L Lu, TL Young, J Lee, AC Thai, CY Cheng, RM van Dam, Y Friedlander, CK Heng, WP Koh, CH Chen, LC Chang, WH Pan, Q Qi, M Isono, W Zheng, Q Cai, Y Gao, K Yamamoto, K Ohnaka, R Takayanagi, Y Kita, H Ueshima, CA Hsiung, J Cui, WH Sheu, JI Rotter, YD Chen, C Hsu, Y Okada, M Kubo, A Takahashi, T Tanaka, FJ van Rooij, SK Ganesh, J Huang, T Huang, J Yuan, JY Hwang, MD Gross, TL Assimes, T Miki, XO Shu, L Qi, YT Chen, X Lin, T Aung, TY Wong, YY Teo, BJ Kim, N Kato, ES Tai
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hematocrit. The EFO term hematocrit was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
SK Ganesh, NA Zakai, FJ van Rooij, N Soranzo, AV Smith, MA Nalls, MH Chen, A Kottgen, NL Glazer, A Dehghan, B Kuhnel, T Aspelund, Q Yang, T Tanaka, A Jaffe, JC Bis, GC Verwoert, A Teumer, CS Fox, JM Guralnik, GB Ehret, K Rice, JF Felix, A Rendon, G Eiriksdottir, D Levy, KV Patel, E Boerwinkle, JI Rotter, A Hofman, JG Sambrook, DG Hernandez, G Zheng, S Bandinelli, AB Singleton, J Coresh, T Lumley, AG Uitterlinden, JM Vangils, LJ Launer, LA Cupples, BA Oostra, JJ Zwaginga, WH Ouwehand, SL Thein, C Meisinger, P Deloukas, M Nauck, TD Spector, C Gieger, V Gudnason, CM van Duijn, BM Psaty, L Ferrucci, A Chakravarti, A Greinacher, CJ O'Donnell, JC Witteman, S Furth, M Cushman, TB Harris, JP Lin
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Mean corpuscular hemoglobin. The EFO term mean corpuscular hemoglobin was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
SK Ganesh, NA Zakai, FJ van Rooij, N Soranzo, AV Smith, MA Nalls, MH Chen, A Kottgen, NL Glazer, A Dehghan, B Kuhnel, T Aspelund, Q Yang, T Tanaka, A Jaffe, JC Bis, GC Verwoert, A Teumer, CS Fox, JM Guralnik, GB Ehret, K Rice, JF Felix, A Rendon, G Eiriksdottir, D Levy, KV Patel, E Boerwinkle, JI Rotter, A Hofman, JG Sambrook, DG Hernandez, G Zheng, S Bandinelli, AB Singleton, J Coresh, T Lumley, AG Uitterlinden, JM Vangils, LJ Launer, LA Cupples, BA Oostra, JJ Zwaginga, WH Ouwehand, SL Thein, C Meisinger, P Deloukas, M Nauck, TD Spector, C Gieger, V Gudnason, CM van Duijn, BM Psaty, L Ferrucci, A Chakravarti, A Greinacher, CJ O'Donnell, JC Witteman, S Furth, M Cushman, TB Harris, JP Lin
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Other erythrocyte phenotypes. The EFO term mean corpuscular hemoglobin concentration was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
SK Ganesh, NA Zakai, FJ van Rooij, N Soranzo, AV Smith, MA Nalls, MH Chen, A Kottgen, NL Glazer, A Dehghan, B Kuhnel, T Aspelund, Q Yang, T Tanaka, A Jaffe, JC Bis, GC Verwoert, A Teumer, CS Fox, JM Guralnik, GB Ehret, K Rice, JF Felix, A Rendon, G Eiriksdottir, D Levy, KV Patel, E Boerwinkle, JI Rotter, A Hofman, JG Sambrook, DG Hernandez, G Zheng, S Bandinelli, AB Singleton, J Coresh, T Lumley, AG Uitterlinden, JM Vangils, LJ Launer, LA Cupples, BA Oostra, JJ Zwaginga, WH Ouwehand, SL Thein, C Meisinger, P Deloukas, M Nauck, TD Spector, C Gieger, V Gudnason, CM van Duijn, BM Psaty, L Ferrucci, A Chakravarti, A Greinacher, CJ O'Donnell, JC Witteman, S Furth, M Cushman, TB Harris, JP Lin
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Other erythrocyte phenotypes. The EFO term erythrocyte count was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
SK Ganesh, NA Zakai, FJ van Rooij, N Soranzo, AV Smith, MA Nalls, MH Chen, A Kottgen, NL Glazer, A Dehghan, B Kuhnel, T Aspelund, Q Yang, T Tanaka, A Jaffe, JC Bis, GC Verwoert, A Teumer, CS Fox, JM Guralnik, GB Ehret, K Rice, JF Felix, A Rendon, G Eiriksdottir, D Levy, KV Patel, E Boerwinkle, JI Rotter, A Hofman, JG Sambrook, DG Hernandez, G Zheng, S Bandinelli, AB Singleton, J Coresh, T Lumley, AG Uitterlinden, JM Vangils, LJ Launer, LA Cupples, BA Oostra, JJ Zwaginga, WH Ouwehand, SL Thein, C Meisinger, P Deloukas, M Nauck, TD Spector, C Gieger, V Gudnason, CM van Duijn, BM Psaty, L Ferrucci, A Chakravarti, A Greinacher, CJ O'Donnell, JC Witteman, S Furth, M Cushman, TB Harris, JP Lin
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Mean corpuscular volume. The EFO term mean corpuscular volume was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
SK Ganesh, NA Zakai, FJ van Rooij, N Soranzo, AV Smith, MA Nalls, MH Chen, A Kottgen, NL Glazer, A Dehghan, B Kuhnel, T Aspelund, Q Yang, T Tanaka, A Jaffe, JC Bis, GC Verwoert, A Teumer, CS Fox, JM Guralnik, GB Ehret, K Rice, JF Felix, A Rendon, G Eiriksdottir, D Levy, KV Patel, E Boerwinkle, JI Rotter, A Hofman, JG Sambrook, DG Hernandez, G Zheng, S Bandinelli, AB Singleton, J Coresh, T Lumley, AG Uitterlinden, JM Vangils, LJ Launer, LA Cupples, BA Oostra, JJ Zwaginga, WH Ouwehand, SL Thein, C Meisinger, P Deloukas, M Nauck, TD Spector, C Gieger, V Gudnason, CM van Duijn, BM Psaty, L Ferrucci, A Chakravarti, A Greinacher, CJ O'Donnell, JC Witteman, S Furth, M Cushman, TB Harris, JP Lin
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was HbA2 levels. The EFO term hemoglobin A2 measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Beta thalassemia/hemoglobin E disease. The EFO term Hemoglobin E disease was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Nuinoon, W Makarasara, T Mushiroda, I Setianingsih, PA Wahidiyat, O Sripichai, N Kumasaka, A Takahashi, S Svasti, T Munkongdee, S Mahasirimongkol, C Peerapittayamongkol, V Viprakasit, N Kamatani, P Winichagoon, M Kubo, Y Nakamura, S Fucharoen
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hodgkin's lymphoma. The EFO term Hodgkins lymphoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Frampton, MI da Silva Filho, P Broderick, H Thomsen, A Försti, J Vijayakrishnan, R Cooke, V Enciso-Mora, P Hoffmann, MM Nöthen, A Lloyd, A Holroyd, L Eisele, KH Jöckel, S Ponader, EP von Strandmann, T Lightfoot, E Roman, A Lake, D Montgomery, RF Jarrett, AJ Swerdlow, A Engert, K Hemminki, RS Houlston
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Hemoglobin A2 levels in sickle cell anemia. The EFO term Sickle cell anemia, hemoglobin A2 measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
PJ Griffin, P Sebastiani, H Edward, CT Baldwin, MT Gladwin, VR Gordeuk, DH Chui, MH Steinberg
Gene expression changes in the post-mortem nucleus accumbens of chronic heroin abusers. Overall, little overlap in gene expression profiles was seen between the two drug-abusing cohorts: out of the approximately 39,000 transcripts investigated, the abundance of only 25 was significantly changed in both cocaine and heroin abusers, with nearly one-half of these being altered in opposite directions. 1050 Transcripts had different in abundance between the majority of heroin subjects and their matched controls.
Hippocampus Gene Expression Correlates for OF_DIST_0_5 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The OF_DIST_0_5 measures Open Field - Total distance traveled 0-5 minutes under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for OF_DIST_10_15 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The OF_DIST_10_15 measures Open Field - Total distance traveled 10-15 minutes under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for OF_DIST_10_15 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The OF_DIST_10_15 measures Open Field - Total distance traveled 10-15 minutes under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Hippocampus Gene Expression Correlates for OF_DIST_5_10 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The OF_DIST_5_10 measures Open Field - Total distance traveled 5-10 minutes under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for OF_DIST_5_10 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The OF_DIST_5_10 measures Open Field - Total distance traveled 5-10 minutes under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Cerebellum Gene Expression Correlates for ADUL_RMS_BRDU measured in BXD RI Females obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The ADUL_RMS_BRDU measures Neurogenesis- BrdU labeled new neurons in Adult Rostral Migratory Stream 1 hr post BrdU under the domain Neurogenesis. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT45 measured in BXD RI Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT45 measures Morphine photocell counts minutes 30-45 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT60 measured in BXD RI Females & Males obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT60 measures Morphine photocell counts minutes 45-60 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Cerebellum Gene Expression Correlates for AMCNT60 measured in BXD RI Females obtained using SJUT Cerebellum mRNA M430 (Mar05) RMA. The AMCNT60 measures Morphine photocell counts minutes 45-60 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
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