List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Prostate cancer. The EFO term prostate carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
R Takata, S Akamatsu, M Kubo, A Takahashi, N Hosono, T Kawaguchi, T Tsunoda, J Inazawa, N Kamatani, O Ogawa, T Fujioka, Y Nakamura, H Nakagawa
Whole Brain Gene Expression Correlates for HAND_4HOURS measured in BXD RI Males obtained using INIA Brain mRNA M430 (Jun06) RMA. The HAND_4HOURS measures Handling induced convulsions 4 hrs after ethanol under the domain Ethanol HIC. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Hippocampus Gene Expression Correlates for VERCNT120 measured in BXD RI Females obtained using GeneNetwork Hippocampus Consortium M430v2 (Jun06) RMA. The VERCNT120 measures Morphine vertical activity counts minutes 105-120 under the domain Morphine. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
QTL for alcohol preference locus on Chr10 at D10Mit126 (39.43 Mbp , Build 37)
Description:
alcohol preference locus spans 14.43 - 64.43 Mbp (NCBI Build 37) on Chr10. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for alcohol preference locus on Chr10 at D10Mit126 (39.43 Mbp , Build 37)
Description:
alcohol preference locus spans 14.43 - 64.43 Mbp (NCBI Build 37) on Chr10. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for alcohol preference on Chr10 at NA (71.07 Mbp , Build 37)
Description:
alcohol preference spans 46.07 - 96.07 Mbp (NCBI Build 37) on Chr10. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Genes associated with Ruditapes philippinarum that interact with the MeSH term 'sodium arsenate' (C009277). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
QTL associated with age related thymic involution 2. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (66329535)
Authors:
Hsu HC, Zhang HG, Li L, Yi N, Yang PA, Wu Q, Zhou J, Sun S, Xu X, Yang X, Lu L, Van Zant G, Williams RW, Allison DB, Mountz JD
QTL associated with arthropathy in MRL and DBA/1 mice 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (72139307)
Authors:
Oishi H, Miyazaki T, Mizuki S, Kamogawa J, Lu LM, Tsubaki T, Arita N, Ono M, Yamamoto H, Nose M
QTL associated with B.burgdorferi-associated arthritis 18. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (65964981)
Authors:
Roper RJ, Weis JJ, McCracken BA, Green CB, Ma Y, Weber KS, Fairbairn D, Butterfield RJ, Potter MR, Zachary JF, Doerge RW, Teuscher C
QTL associated with cystic fibrosis intestinal distress. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (46564113)
QTL associated with collagen induced arthritis QTL 8. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (74337186)
QTL associated with directional asymmetry QTL 4. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (51337110)
QTL associated with directional asymmetry QTL 5. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (51337110)
QTL associated with experimental allergic encephalomyelitis susceptibility 17. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (67718408)
QTL associated with femoral bone trait QTL 4. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (28871992)
Authors:
Koller DL, Schriefer J, Sun Q, Shultz KL, Donahue LR, Rosen CJ, Foroud T, Beamer WG, Turner CH
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