List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Periodontitis. The EFO term periodontitis was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
S Shimizu, Y Momozawa, A Takahashi, T Nagasawa, K Ashikawa, Y Terada, Y Izumi, H Kobayashi, M Tsuji, M Kubo, Y Furuichi
QTL for nicotine sensitivity on Chr13 at D13Mit218 (22.75 Mbp , Build 37)
Description:
nicotine sensitivity spans 0.00 - 47.75 Mbp (NCBI Build 37) on Chr13. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
QTL for nicotine sensitivity on Chr13 at D13Mit59 (37.58 Mbp , Build 37)
Description:
nicotine sensitivity spans 12.58 - 62.58 Mbp (NCBI Build 37) on Chr13. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Genes associated with Homo sapiens that interact with the MeSH term 'Copper Sulfate' (D019327). Incorporates data from 72 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Oxygen' (D010100). Incorporates data from 8 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Nickel' (D009532). Incorporates data from 166 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'zoledronic acid' (C088658). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
QTL associated with wound healing/regeneration 3. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (20587899)
Authors:
Heber-Katz E, Leferovich JM, Bedelbaeva K, Gourevitch D
QTL associated with insulin dependent diabetes susceptibility 14. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (41008627)
Authors:
Takenaka K, Prasolava TK, Wang JC, Mortin-Toth SM, Khalouei S, Gan OI, Dick JE, Danska JS
QTL associated with modifier of Salmonella typhimurium susceptibility 4. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (37654832)
Authors:
Borrego A, Peters LC, Jensen JR, Ribeiro OG, Koury Cabrera WH, Starobinas N, Seman M, Ibaez OM, De Franco M
QTL associated with nicotine induced locomotor activity 7. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (19721387)
QTL associated with voluntary alcohol consumption QTL 5. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (37033374)
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