List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Basal cell carcinoma. The EFO term basal cell carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
T Rafnar, P Sulem, SN Stacey, F Geller, J Gudmundsson, A Sigurdsson, M Jakobsdottir, H Helgadottir, S Thorlacius, KK Aben, T Blöndal, TE Thorgeirsson, G Thorleifsson, K Kristjansson, K Thorisdottir, R Ragnarsson, B Sigurgeirsson, H Skuladottir, T Gudbjartsson, HJ Isaksson, GV Einarsson, KR Benediktsdottir, BA Agnarsson, K Olafsson, A Salvarsdottir, H Bjarnason, M Asgeirsdottir, KT Kristinsson, S Matthiasdottir, SG Sveinsdottir, S Polidoro, V Höiom, R Botella-Estrada, K Hemminki, P Rudnai, DT Bishop, M Campagna, E Kellen, MP Zeegers, P de Verdier, A Ferrer, D Isla, MJ Vidal, R Andres, B Saez, P Juberias, J Banzo, S Navarrete, A Tres, D Kan, A Lindblom, E Gurzau, K Koppova, F de Vegt, JA Schalken, HF van der Heijden, HJ Smit, RA Termeer, E Oosterwijk, O van Hooij, E Nagore, S Porru, G Steineck, J Hansson, F Buntinx, WJ Catalona, G Matullo, P Vineis, AE Kiltie, JI Mayordomo, R Kumar, LA Kiemeney, ML Frigge, T Jonsson, H Saemundsson, RB Barkardottir, E Jonsson, S Jonsson, JH Olafsson, JR Gulcher, G Masson, DF Gudbjartsson, A Kong, U Thorsteinsdottir, K Stefansson
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Nasopharyngeal carcinoma. The EFO term nasopharyngeal neoplasm was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
Q Cui, QS Feng, HY Mo, J Sun, YF Xia, H Zhang, JN Foo, YM Guo, LZ Chen, M Li, WS Liu, M Xu, G Zhou, F He, X Yu, WH Jia, J Liu, YX Zeng, JX Bei
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Lung adenocarcinoma. The EFO term lung adenocarcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
CA Hsiung, Q Lan, YC Hong, CJ Chen, HD Hosgood, IS Chang, N Chatterjee, P Brennan, C Wu, W Zheng, GC Chang, T Wu, JY Park, CF Hsiao, YH Kim, H Shen, A Seow, M Yeager, YH Tsai, YT Kim, WH Chow, H Guo, WC Wang, SW Sung, Z Hu, KY Chen, JH Kim, Y Chen, L Huang, KM Lee, YL Lo, YT Gao, JH Kim, L Liu, MS Huang, TH Jung, G Jin, N Caporaso, D Yu, CH Kim, WC Su, XO Shu, P Xu, IS Kim, YM Chen, H Ma, M Shen, SI Cha, W Tan, CH Chang, JS Sung, M Zhang, TY Yang, KH Park, J Yuenger, CL Wang, JS Ryu, Y Xiang, Q Deng, A Hutchinson, JS Kim, Q Cai, MT Landi, CJ Yu, JY Park, M Tucker, JY Hung, CC Lin, RP Perng, P Boffetta, CY Chen, KC Chen, SY Yang, CY Hu, CK Chang, JF Fraumeni, S Chanock, PC Yang, N Rothman, D Lin
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Lung cancer. The EFO term lung carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
Y Wang, P Broderick, E Webb, X Wu, J Vijayakrishnan, A Matakidou, M Qureshi, Q Dong, X Gu, WV Chen, MR Spitz, T Eisen, CI Amos, RS Houlston
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Pancreatic cancer. The EFO term pancreatic carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Zhang, Z Wang, O Obazee, J Jia, EJ Childs, J Hoskins, G Figlioli, E Mocci, I Collins, CC Chung, C Hautman, AA Arslan, L Beane-Freeman, PM Bracci, J Buring, EJ Duell, S Gallinger, GG Giles, GE Goodman, PJ Goodman, A Kamineni, LN Kolonel, MH Kulke, N Malats, SH Olson, HD Sesso, K Visvanathan, E White, W Zheng, CC Abnet, D Albanes, G Andreotti, L Brais, HB Bueno-de-Mesquita, D Basso, SI Berndt, MC Boutron-Ruault, MF Bijlsma, H Brenner, L Burdette, D Campa, NE Caporaso, G Capurso, GM Cavestro, M Cotterchio, E Costello, J Elena, U Boggi, JM Gaziano, M Gazouli, EL Giovannucci, M Goggins, M Gross, CA Haiman, M Hassan, KJ Helzlsouer, N Hu, DJ Hunter, E Iskierka-Jazdzewska, M Jenab, R Kaaks, TJ Key, KT Khaw, EA Klein, M Kogevinas, V Krogh, J Kupcinskas, RC Kurtz, MT Landi, S Landi, L Le Marchand, A Mambrini, S Mannisto, RL Milne, RE Neale, AL Oberg, S Panico, AV Patel, PH Peeters, U Peters, R Pezzilli, M Porta, M Purdue, JR Quiros, E Riboli, N Rothman, A Scarpa, G Scelo, XO Shu, DT Silverman, P Soucek, O Strobel, M Sund, E Małecka-Panas, PR Taylor, F Tavano, RC Travis, M Thornquist, A Tjønneland, GS Tobias, D Trichopoulos, Y Vashist, P Vodicka, J Wactawski-Wende, N Wentzensen, H Yu, K Yu, A Zeleniuch-Jacquotte, C Kooperberg, HA Risch, EJ Jacobs, D Li, C Fuchs, R Hoover, P Hartge, SJ Chanock, GM Petersen, RS Stolzenberg-Solomon, BM Wolpin, P Kraft, AP Klein, F Canzian, LT Amundadottir
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Lung cancer. The EFO term lung carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
JD McKay, RJ Hung, V Gaborieau, P Boffetta, A Chabrier, G Byrnes, D Zaridze, A Mukeria, N Szeszenia-Dabrowska, J Lissowska, P Rudnai, E Fabianova, D Mates, V Bencko, L Foretova, V Janout, J McLaughlin, F Shepherd, A Montpetit, S Narod, HE Krokan, F Skorpen, MB Elvestad, L Vatten, I Njølstad, T Axelsson, C Chen, G Goodman, M Barnett, MM Loomis, J Lubiñski, J Matyjasik, M Lener, D Oszutowska, J Field, T Liloglou, G Xinarianos, A Cassidy, P Vineis, F Clavel-Chapelon, D Palli, R Tumino, V Krogh, S Panico, CA González, J Ramón Quirós, C MartÃnez, C Navarro, E Ardanaz, N Larrañaga, KT Kham, T Key, HB Bueno-de-Mesquita, PH Peeters, A Trichopoulou, J Linseisen, H Boeing, G Hallmans, K Overvad, A Tjønneland, M Kumle, E Riboli, D Zelenika, A Boland, M Delepine, M Foglio, D Lechner, F Matsuda, H Blanche, I Gut, S Heath, M Lathrop, P Brennan
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Oral cavity cancer. The EFO term oral cavity cancer was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Pancreatic cancer. The EFO term pancreatic carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
GM Petersen, L Amundadottir, CS Fuchs, P Kraft, RZ Stolzenberg-Solomon, KB Jacobs, AA Arslan, HB Bueno-de-Mesquita, S Gallinger, M Gross, K Helzlsouer, EA Holly, EJ Jacobs, AP Klein, A LaCroix, D Li, MT Mandelson, SH Olson, HA Risch, W Zheng, D Albanes, WR Bamlet, CD Berg, MC Boutron-Ruault, JE Buring, PM Bracci, F Canzian, S Clipp, M Cotterchio, M de Andrade, EJ Duell, JM Gaziano, EL Giovannucci, M Goggins, G Hallmans, SE Hankinson, M Hassan, B Howard, DJ Hunter, A Hutchinson, M Jenab, R Kaaks, C Kooperberg, V Krogh, RC Kurtz, SM Lynch, RR McWilliams, JB Mendelsohn, DS Michaud, H Parikh, AV Patel, PH Peeters, A Rajkovic, E Riboli, L Rodriguez, D Seminara, XO Shu, G Thomas, A Tjønneland, GS Tobias, D Trichopoulos, SK Van Den Eeden, J Virtamo, J Wactawski-Wende, Z Wang, BM Wolpin, H Yu, K Yu, A Zeleniuch-Jacquotte, JF Fraumeni, RN Hoover, P Hartge, SJ Chanock
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Chronic lymphocytic leukemia. The EFO term chronic lymphocytic leukemia was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
HE Speedy, MC Di Bernardo, GP Sava, MJ Dyer, A Holroyd, Y Wang, NJ Sunter, L Mansouri, G Juliusson, KE Smedby, G Roos, S Jayne, A Majid, C Dearden, AG Hall, T Mainou-Fowler, GH Jackson, G Summerfield, RJ Harris, AR Pettitt, DJ Allsup, JR Bailey, G Pratt, C Pepper, C Fegan, R Rosenquist, D Catovsky, JM Allan, RS Houlston
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Testicular germ cell cancer. The EFO term testicular carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
C Turnbull, EA Rapley, S Seal, D Pernet, A Renwick, D Hughes, M Ricketts, R Linger, J Nsengimana, P Deloukas, RA Huddart, DT Bishop, DF Easton, MR Stratton, N Rahman
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Breast cancer. The EFO term breast carcinoma was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
CA Haiman, GK Chen, CM Vachon, F Canzian, A Dunning, RC Millikan, X Wang, F Ademuyiwa, S Ahmed, CB Ambrosone, L Baglietto, R Balleine, EV Bandera, MW Beckmann, CD Berg, L Bernstein, C Blomqvist, WJ Blot, H Brauch, JE Buring, LA Carey, JE Carpenter, J Chang-Claude, SJ Chanock, DI Chasman, CL Clarke, A Cox, SS Cross, SL Deming, RB Diasio, AM Dimopoulos, WR Driver, T Dünnebier, L Durcan, D Eccles, CK Edlund, AB Ekici, PA Fasching, HS Feigelson, D Flesch-Janys, F Fostira, A Försti, G Fountzilas, SM Gerty, GG Giles, AK Godwin, P Goodfellow, N Graham, D Greco, U Hamann, SE Hankinson, A Hartmann, R Hein, J Heinz, A Holbrook, RN Hoover, JJ Hu, DJ Hunter, SA Ingles, A Irwanto, J Ivanovich, EM John, N Johnson, A Jukkola-Vuorinen, R Kaaks, YD Ko, LN Kolonel, I Konstantopoulou, VM Kosma, S Kulkarni, D Lambrechts, AM Lee, LL Marchand, T Lesnick, J Liu, S Lindstrom, A Mannermaa, S Margolin, NG Martin, P Miron, GW Montgomery, H Nevanlinna, S Nickels, S Nyante, C Olswold, J Palmer, H Pathak, D Pectasides, CM Perou, J Peto, PD Pharoah, LC Pooler, MF Press, K Pylkäs, TR Rebbeck, JL Rodriguez-Gil, L Rosenberg, E Ross, T Rüdiger, Idos S Silva, E Sawyer, MK Schmidt, R Schulz-Wendtland, F Schumacher, G Severi, X Sheng, LB Signorello, HP Sinn, KN Stevens, MC Southey, WJ Tapper, I Tomlinson, FB Hogervorst, E Wauters, J Weaver, H Wildiers, R Winqvist, D Van Den Berg, P Wan, LY Xia, D Yannoukakos, W Zheng, RG Ziegler, A Siddiq, SL Slager, DO Stram, D Easton, P Kraft, BE Henderson, FJ Couch
Striatum Gene Expression Correlates for MDMA_ACT_SAL_2 measured in BXD RI Males obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The MDMA_ACT_SAL_2 measures Locomotor activity after second saline treatment. under the domain MDMA. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
QTL for ethanol withdrawal on Chr13 at D13Ncvs35 (71.29 Mbp , Build 37)
Description:
ethanol withdrawal spans 46.29 - 96.29 Mbp (NCBI Build 37) on Chr13. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org).
Genes associated with Homo sapiens that interact with the MeSH term 'Arsenic' (D001151). Incorporates data from 87 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'arsenite' (C015001). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Camptothecin' (D002166). Incorporates data from 19 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Zinc' (D015032). Incorporates data from 59 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Hydrogen Peroxide' (D006861). Incorporates data from 4 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Valproic Acid' (D014635). Incorporates data from 1238 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
Genes associated with Homo sapiens that interact with the MeSH term 'Cisplatin' (D002945). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene.
QTL associated with spontaneous crescentic glomerulonephritis QTL 5. The confidence interval is Chr13:35968794-96872609 bp,+strand
Authors:
Hamano Y, Tsukamoto K, Abe M, Sun GD, Zhang D, Fujii H, Matsuoka S, Tanaka M, Ishida-Okawara A, Tachikawa H, Nishimura H, Tokunaka K, Hirose S, Suzuki K
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