GWAS: chronic kidney disease, GFR change measurement
Description:
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Kidney function decline traits. The EFO term chronic kidney disease, GFR change measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Gorski, A Tin, M Garnaas, GM McMahon, AY Chu, BO Tayo, C Pattaro, A Teumer, DI Chasman, J Chalmers, P Hamet, J Tremblay, M Woodward, T Aspelund, G Eiriksdottir, V Gudnason, TB Harris, LJ Launer, AV Smith, BD Mitchell, JR O'Connell, AR Shuldiner, J Coresh, M Li, P Freudenberger, E Hofer, H Schmidt, R Schmidt, EG Holliday, P Mitchell, JJ Wang, IH de Boer, G Li, DS Siscovick, Z Kutalik, T Corre, P Vollenweider, G Waeber, J Gupta, PA Kanetsky, SJ Hwang, M Olden, Q Yang, M de Andrade, EJ Atkinson, SL Kardia, ST Turner, JM Stafford, J Ding, Y Liu, C Barlassina, D Cusi, E Salvi, JA Staessen, PM Ridker, H Grallert, C Meisinger, M Müller-Nurasyid, BK Krämer, H Kramer, SE Rosas, IM Nolte, BW Penninx, H Snieder, M Fabiola Del Greco, A Franke, U Nöthlings, W Lieb, SJ Bakker, RT Gansevoort, P van der Harst, A Dehghan, OH Franco, A Hofman, F Rivadeneira, S Sedaghat, AG Uitterlinden, S Coassin, M Haun, B Kollerits, F Kronenberg, B Paulweber, N Aumann, K Endlich, M Pietzner, U Völker, R Rettig, V Chouraki, C Helmer, JC Lambert, M Metzger, B Stengel, T Lehtimäki, LP Lyytikäinen, O Raitakari, A Johnson, A Parsa, M Bochud, IM Heid, W Goessling, A Köttgen, WH Kao, CS Fox, CA Böger
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Kidney function decline traits. The EFO term chronic kidney disease was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Gorski, A Tin, M Garnaas, GM McMahon, AY Chu, BO Tayo, C Pattaro, A Teumer, DI Chasman, J Chalmers, P Hamet, J Tremblay, M Woodward, T Aspelund, G Eiriksdottir, V Gudnason, TB Harris, LJ Launer, AV Smith, BD Mitchell, JR O'Connell, AR Shuldiner, J Coresh, M Li, P Freudenberger, E Hofer, H Schmidt, R Schmidt, EG Holliday, P Mitchell, JJ Wang, IH de Boer, G Li, DS Siscovick, Z Kutalik, T Corre, P Vollenweider, G Waeber, J Gupta, PA Kanetsky, SJ Hwang, M Olden, Q Yang, M de Andrade, EJ Atkinson, SL Kardia, ST Turner, JM Stafford, J Ding, Y Liu, C Barlassina, D Cusi, E Salvi, JA Staessen, PM Ridker, H Grallert, C Meisinger, M Müller-Nurasyid, BK Krämer, H Kramer, SE Rosas, IM Nolte, BW Penninx, H Snieder, M Fabiola Del Greco, A Franke, U Nöthlings, W Lieb, SJ Bakker, RT Gansevoort, P van der Harst, A Dehghan, OH Franco, A Hofman, F Rivadeneira, S Sedaghat, AG Uitterlinden, S Coassin, M Haun, B Kollerits, F Kronenberg, B Paulweber, N Aumann, K Endlich, M Pietzner, U Völker, R Rettig, V Chouraki, C Helmer, JC Lambert, M Metzger, B Stengel, T Lehtimäki, LP Lyytikäinen, O Raitakari, A Johnson, A Parsa, M Bochud, IM Heid, W Goessling, A Köttgen, WH Kao, CS Fox, CA Böger
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Kidney function decline traits. The EFO term rapid kidney function decline was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Gorski, A Tin, M Garnaas, GM McMahon, AY Chu, BO Tayo, C Pattaro, A Teumer, DI Chasman, J Chalmers, P Hamet, J Tremblay, M Woodward, T Aspelund, G Eiriksdottir, V Gudnason, TB Harris, LJ Launer, AV Smith, BD Mitchell, JR O'Connell, AR Shuldiner, J Coresh, M Li, P Freudenberger, E Hofer, H Schmidt, R Schmidt, EG Holliday, P Mitchell, JJ Wang, IH de Boer, G Li, DS Siscovick, Z Kutalik, T Corre, P Vollenweider, G Waeber, J Gupta, PA Kanetsky, SJ Hwang, M Olden, Q Yang, M de Andrade, EJ Atkinson, SL Kardia, ST Turner, JM Stafford, J Ding, Y Liu, C Barlassina, D Cusi, E Salvi, JA Staessen, PM Ridker, H Grallert, C Meisinger, M Müller-Nurasyid, BK Krämer, H Kramer, SE Rosas, IM Nolte, BW Penninx, H Snieder, M Fabiola Del Greco, A Franke, U Nöthlings, W Lieb, SJ Bakker, RT Gansevoort, P van der Harst, A Dehghan, OH Franco, A Hofman, F Rivadeneira, S Sedaghat, AG Uitterlinden, S Coassin, M Haun, B Kollerits, F Kronenberg, B Paulweber, N Aumann, K Endlich, M Pietzner, U Völker, R Rettig, V Chouraki, C Helmer, JC Lambert, M Metzger, B Stengel, T Lehtimäki, LP Lyytikäinen, O Raitakari, A Johnson, A Parsa, M Bochud, IM Heid, W Goessling, A Köttgen, WH Kao, CS Fox, CA Böger
List of positional candidate genes after correcting for multiple testing and controlling the false discovery rate from genome wide association studies (GWAS) retrieved from the NHGRI-EBI Catalog of published genome-wide association studies (http://www.ebi.ac.uk/gwas/). The disease/trait examined in this study, as reported by the authors, was Kidney function decline traits. The EFO term GFR change measurement was annotated to this set after curation by NHGRI-EBI. Intergenic SNPS were mapped to both the upstream and downstream gene. P-value uploaded. This gene set was generated using gwas2gs v. 0.1.8 and the GWAS Catalog v. 1.0.1.
Authors:
M Gorski, A Tin, M Garnaas, GM McMahon, AY Chu, BO Tayo, C Pattaro, A Teumer, DI Chasman, J Chalmers, P Hamet, J Tremblay, M Woodward, T Aspelund, G Eiriksdottir, V Gudnason, TB Harris, LJ Launer, AV Smith, BD Mitchell, JR O'Connell, AR Shuldiner, J Coresh, M Li, P Freudenberger, E Hofer, H Schmidt, R Schmidt, EG Holliday, P Mitchell, JJ Wang, IH de Boer, G Li, DS Siscovick, Z Kutalik, T Corre, P Vollenweider, G Waeber, J Gupta, PA Kanetsky, SJ Hwang, M Olden, Q Yang, M de Andrade, EJ Atkinson, SL Kardia, ST Turner, JM Stafford, J Ding, Y Liu, C Barlassina, D Cusi, E Salvi, JA Staessen, PM Ridker, H Grallert, C Meisinger, M Müller-Nurasyid, BK Krämer, H Kramer, SE Rosas, IM Nolte, BW Penninx, H Snieder, M Fabiola Del Greco, A Franke, U Nöthlings, W Lieb, SJ Bakker, RT Gansevoort, P van der Harst, A Dehghan, OH Franco, A Hofman, F Rivadeneira, S Sedaghat, AG Uitterlinden, S Coassin, M Haun, B Kollerits, F Kronenberg, B Paulweber, N Aumann, K Endlich, M Pietzner, U Völker, R Rettig, V Chouraki, C Helmer, JC Lambert, M Metzger, B Stengel, T Lehtimäki, LP Lyytikäinen, O Raitakari, A Johnson, A Parsa, M Bochud, IM Heid, W Goessling, A Köttgen, WH Kao, CS Fox, CA Böger
Neocortex Gene Expression Correlates for VONFREYTHRESHOLDMEAN measured in BXD RI Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The VONFREYTHRESHOLDMEAN measures Mechanical Sensitivity-Von Frey Threshold under the domain Pain. The correlates were thresholded at a p-value of less than 0.001.
Striatum Gene Expression Correlates for OF_DIST_0_5 measured in BXD RI Females obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The OF_DIST_0_5 measures Open Field - Total distance traveled 0-5 minutes under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for OF_DIST_5_10 measured in BXD RI Females obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The OF_DIST_5_10 measures Open Field - Total distance traveled 5-10 minutes under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for OF_DIST_5_10 measured in BXD RI Females obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The OF_DIST_5_10 measures Open Field - Total distance traveled 5-10 minutes under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Neocortex Gene Expression Correlates for VONFREYTHRESHOLDMEAN measured in BXD RI Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The VONFREYTHRESHOLDMEAN measures Mechanical Sensitivity-Von Frey Threshold under the domain Pain. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Striatum Gene Expression Correlates for LM_BASELINE measured in BXD RI Females obtained using GeneNetwork Striatum M430V2 (Apr05) RMA. The LM_BASELINE measures Baseline activity in fear conditioning apparatus under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Neocortex Gene Expression Correlates for MDMA_ACT_MDA_1 measured in BXD RI Females obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The MDMA_ACT_MDA_1 measures Locomotor response of 10 mg/kg MDMA injected on Day 2 under the domain MDMA. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Neocortex Gene Expression Correlates for ZM_PCT_OPEN measured in BXD RI Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The ZM_PCT_OPEN measures Zero Maze - Percentage open time under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Neocortex Gene Expression Correlates for ZM_TCLOSED measured in BXD RI Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The ZM_TCLOSED measures Zero Maze - Time in Closed Arms under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
Neocortex Gene Expression Correlates for ZM_TOPEN measured in BXD RI Males obtained using GeneNetwork Neocortex ILM6v1.1 (Feb08) RankInv. The ZM_TOPEN measures Zero Maze - total time in open quadrants under the domain Basal Behavior. The correlates were thresholded at a p-value of less than 0.001.
Authors:
Philip VM, Duvvuru S, Gomero B, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ
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