Gene Details

SDF2L1 and homologs in 7 species are found in 384 GeneSets:

- Entrez   - Ensembl   - GeneNetwork   - STRING   - Allen Brain Atlas   - Comparative Toxicogenomics Database  

Select gene sets below using the check boxes, and then add them to a project using the pull down below. You can also create a project using the pull down. To view a set, click on the GeneSetID:GeneSet Description shown in green below.

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	Tier II Human 1990 Genes GS238152: [MeSH] Protein Interaction Maps : D060066 Figure Label: Protein Interaction Maps Species: Homo sapiens  Data Points: 1990  Description: Graphs representing sets of measurable, non-covalent physical contacts with specific PROTEINS in living organisms or in cells. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 3831 Genes GS317884: GO:0005623 cell Figure Label: GO:0005623 Species: Rattus norvegicus  Data Points: 3831  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cell", which is defined as "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse 195 Genes GS229785: MSigDB Geneset - GSE7764_IL15_NK_CELL_24H_VS_SPLENOCYTE_UP Figure Label: GSE7764_IL15_NK_CELL_24H_VS_SPLENOCYTE_UP Species: Mus musculus  Data Points: 195  Description: GSE7764_IL15_NK_CELL_24H_VS_SPLENOCYTE_UP Genes up-regulated in comparison of NK cells treated with IL15 [GeneID=3567] versus total splenocytes. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human 186 Genes GS227168: MSigDB Geneset - GSE29614_CTRL_VS_DAY7_TIV_FLU_VACCINE_PBMC_DN Figure Label: GSE29614_CTRL_VS_DAY7_TIV_FLU_VACCINE_PBMC_DN Species: Homo sapiens  Data Points: 186  Description: GSE29614_CTRL_VS_DAY7_TIV_FLU_VACCINE_PBMC_DN Genes down-regulated in comparison of peripheral blood mononuclear cells (PBMC) from TIV influenza vaccinee pre-vaccination versus those from day 7 post-vaccination. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human CTD 537 Genes GS252621: remogliflozin etabonate interacting with Homo sapiens associated genes (MeSH:C532127) in CTD Figure Label: remogliflozin etabonate H.s. Species: Homo sapiens  Data Points: 537  Description: Genes associated with Homo sapiens that interact with the MeSH term 'remogliflozin etabonate' (C532127). Incorporates data from 540 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 328 Genes GS136847: thymic lymphoma suppressor region 7 (Tlsr7, Published QTL Chr 16) Figure Label: QTL-Tlsr7-Mouse-Chr 16 Species: Mus musculus  Data Points: 328  Description: QTL associated with thymic lymphoma suppressor region 7. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (7134817) Available to: Everyone (Tier II)
	Tier I Rat GO 540 Genes GS324601: GO:0010941 regulation of cell death Figure Label: GO:0010941 Species: Rattus norvegicus  Data Points: 540  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "regulation of cell death", which is defined as "Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 1637 Genes GS320698: GO:0016020 membrane Figure Label: GO:0016020 Species: Rattus norvegicus  Data Points: 1637  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "membrane", which is defined as "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse GO 1631 Genes GS334917: GO:0044446 intracellular organelle part Figure Label: GO:0044446 Species: Mus musculus  Data Points: 1631  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular organelle part", which is defined as "A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 87 Genes GS320796: GO:0009057 macromolecule catabolic process Figure Label: GO:0009057 Species: Rattus norvegicus  Data Points: 87  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "macromolecule catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 2240 Genes GS320342: GO:0050794 regulation of cellular process Figure Label: GO:0050794 Species: Rattus norvegicus  Data Points: 2240  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "regulation of cellular process", which is defined as "Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 3309 Genes GS243906: [MeSH] Metabolic Networks and Pathways : D053858 Figure Label: Metabolic Networks and Pathways Species: Homo sapiens  Data Points: 3309  Description: Complex sets of enzymatic reactions connected to each other via their product and substrate metabolites. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 9751 Genes GS244084: [MeSH] Phenotype : D010641 Figure Label: Phenotype Species: Homo sapiens  Data Points: 9751  Description: The outward appearance of the individual. It is the product of interactions between genes, and between the GENOTYPE and the environment. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human CTD 6060 Genes GS122891: Copper Sulfate interacting with Homo sapiens associated genes (MeSH:D019327) in CTD Figure Label: Copper Sulfate H.s. Species: Homo sapiens  Data Points: 6060  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Copper Sulfate' (D019327). Incorporates data from 72 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 193 Genes GS227584: MSigDB Geneset - GSE14350_TREG_VS_TEFF_IN_IL2RB_KO_DN Figure Label: GSE14350_TREG_VS_TEFF_IN_IL2RB_KO_DN Species: Mus musculus  Data Points: 193  Description: GSE14350_TREG_VS_TEFF_IN_IL2RB_KO_DN Genes down-regulated in comparison of regulatory T cell (Treg) from IL2RB [GeneID=3560] defficient mice versus effector T cells from IL2RB [GeneID=3560] defficient mice. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat CTD 363 Genes GS262636: Cyclosporine interacting with Rattus norvegicus associated genes (MeSH:D016572) in CTD Figure Label: Cyclosporine R.n. Species: Rattus norvegicus  Data Points: 363  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Cyclosporine' (D016572). Incorporates data from 73 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 8948 Genes GS244882: [MeSH] Epithelial Cells : D004847 Figure Label: Epithelial Cells Species: Homo sapiens  Data Points: 8948  Description: Cells that line the inner and outer surfaces of the body by forming cellular layers (EPITHELIUM) or masses. Epithelial cells lining the SKIN; the MOUTH; the NOSE; and the ANAL CANAL derive from ectoderm; those lining the RESPIRATORY SYSTEM and the DIGESTIVE SYSTEM derive from endoderm; others (CARDIOVASCULAR SYSTEM and LYMPHATIC SYSTEM) from mesoderm. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 6611 Genes GS234210: [MeSH] HeLa Cells : D006367 Figure Label: HeLa Cells Species: Homo sapiens  Data Points: 6611  Description: The first continuously cultured human malignant CELL LINE, derived from the cervical carcinoma of Henrietta Lacks. These cells are used for VIRUS CULTIVATION and antitumor drug screening assays. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse 190 Genes GS229308: MSigDB Geneset - GSE17721_CPG_VS_GARDIQUIMOD_6H_BMDM_UP Figure Label: GSE17721_CPG_VS_GARDIQUIMOD_6H_BMDM_UP Species: Mus musculus  Data Points: 190  Description: GSE17721_CPG_VS_GARDIQUIMOD_6H_BMDM_UP Genes up-regulated in comparison of dendritic cells (DC) stimulated with CpG DNA (TLR9 agonist) at 6 h versus DC cells stimulated with Gardiquimod (TLR7 agonist) at 6 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human 190 Genes GS230501: MSigDB Geneset - GSE17974_0H_VS_24H_IN_VITRO_ACT_CD4_TCELL_DN Figure Label: GSE17974_0H_VS_24H_IN_VITRO_ACT_CD4_TCELL_DN Species: Homo sapiens  Data Points: 190  Description: GSE17974_0H_VS_24H_IN_VITRO_ACT_CD4_TCELL_DN Genes down-regulated in comparison of untreated CD4 [GeneID=920] T cells at 0 h versus the untreated cells at 24 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human 181 Genes GS227846: MSigDB Geneset - V$NKX22_01 Figure Label: V$NKX22_01 Species: Homo sapiens  Data Points: 181  Description: V$NKX22_01 Genes with promoter regions [-2kb,2kb] around transcription start site containing the motif TTAAGTRSTT which matches annotation for NKX2-2: NK2 transcription factor related, locus 2 (Drosophila) c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human CTD 4474 Genes GS123265: Estradiol interacting with Oryzias latipes associated genes (MeSH:D004958) in CTD Figure Label: Estradiol O.l. Species: Homo sapiens  Data Points: 4474  Description: Genes associated with Oryzias latipes that interact with the MeSH term 'Estradiol' (D004958). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 17829 Genes GS235234: [MeSH] Biochemical Phenomena : D001669 Figure Label: Biochemical Phenomena Species: Homo sapiens  Data Points: 17829  Description: The chemical processes, enzymatic activities, and pathways of living things and related temporal, dimensional, qualitative, and quantitative concepts. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Mouse 296 Genes GS135249: adiposity 17 (Adip17, Published QTL Chr 16) Figure Label: QTL-Adip17-Mouse-Chr 16 Species: Mus musculus  Data Points: 296  Description: QTL associated with adiposity 17. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (3962915) Available to: Everyone (Tier II)
	Tier II Rat 323 Genes GS223646: Serum triglyceride level QTL 12 (Stl12 Published QTL Chr 11) Figure Label: QTL-Stl12-Rat-Chr 11 Species: Rattus norvegicus  Data Points: 323  Description: QTL Associated with Lipid level. On Chromosome 11 with a LOD score= 3.36, p-value =. From a(n) of Available to: Everyone (Tier II)
	Tier I Mouse CTD 3927 Genes GS256188: Valinomycin interacting with Mus musculus associated genes (MeSH:D014634) in CTD Figure Label: Valinomycin M.m. Species: Mus musculus  Data Points: 3927  Description: Genes associated with Mus musculus that interact with the MeSH term 'Valinomycin' (D014634). Incorporates data from 4505 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 5877 Genes GS121789: (6-(4-(2-piperidin-1-ylethoxy)phenyl))-3-pyridin-4-ylpyrazolo(1,5-a)pyrimidine interacting with Homo sapiens associated genes (MeSH:C516138) in CTD Figure Label: (6-(4-(2-piperidin-1-ylethoxy)phenyl... H.s. Species: Homo sapiens  Data Points: 5877  Description: Genes associated with Homo sapiens that interact with the MeSH term '(6-(4-(2-piperidin-1-ylethoxy)phenyl))-3-pyridin-4-ylpyrazolo(1,5-a)pyrimidine' (C516138). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 7246 Genes GS234071: [MeSH] Protein Modification, Translational : D046188 Figure Label: Protein Modification, Translational Species: Homo sapiens  Data Points: 7246  Description: Any of the enzymatically catalyzed modifications of the individual AMINO ACIDS of PROTEINS, and enzymatic cleavage or crosslinking of peptide chains that occur pre-translationally (on the amino acid component of AMINO ACYL TRNA), co-translationally (during the process of GENETIC TRANSLATION), or after translation is completed (POST-TRANSLATIONAL PROTEIN PROCESSING). Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human CTD 2082 Genes GS253464: K 7174 interacting with Homo sapiens associated genes (MeSH:C410337) in CTD Figure Label: K 7174 H.s. Species: Homo sapiens  Data Points: 2082  Description: Genes associated with Homo sapiens that interact with the MeSH term 'K 7174' (C410337). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 196 Genes GS227137: MSigDB Geneset - GSE27786_CD8_TCELL_VS_NKCELL_DN Figure Label: GSE27786_CD8_TCELL_VS_NKCELL_DN Species: Mus musculus  Data Points: 196  Description: GSE27786_CD8_TCELL_VS_NKCELL_DN Genes down-regulated in comparison of CD8 T cells versus NK cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 1992 Genes GS316978: GO:0008152 metabolic process Figure Label: GO:0008152 Species: Rattus norvegicus  Data Points: 1992  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "metabolic process", which is defined as "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 17829 Genes GS238030: [MeSH] Chemical Phenomena : D055598 Figure Label: Chemical Phenomena Species: Homo sapiens  Data Points: 17829  Description: The composition, conformation, and properties of atoms and molecules, and their reaction and interaction processes. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse GO 1472 Genes GS331774: GO:0032991 protein-containing complex Figure Label: GO:0032991 Species: Mus musculus  Data Points: 1472  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "protein-containing complex", which is defined as "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 323 Genes GS129085: brain and behavior QTL 1 (Bbq1 Published QTL Chr 16) Figure Label: QTL-Bbq1-Mouse-Chr 16 Species: Mus musculus  Data Points: 323  Description: QTL associated with brain and behavior QTL 1. The confidence interval is Chr16:6659238-35200932 bp,+strand Available to: Everyone (Tier II)
	Tier I Rat CTD 503 Genes GS265794: troglitazone interacting with Rattus norvegicus associated genes (MeSH:C057693) in CTD Figure Label: troglitazone R.n. Species: Rattus norvegicus  Data Points: 503  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'troglitazone' (C057693). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 4225 Genes GS321601: GO:0005575 cellular_component Figure Label: GO:0005575 Species: Rattus norvegicus  Data Points: 4225  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular_component", which is defined as "The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 8168 Genes GS238718: [MeSH] Peptide Biosynthesis : D010452 Figure Label: Peptide Biosynthesis Species: Homo sapiens  Data Points: 8168  Description: The production of PEPTIDES or PROTEINS by the constituents of a living organism. The biosynthesis of proteins on RIBOSOMES following an RNA template is termed translation (TRANSLATION, GENETIC). There are other, non-ribosomal peptide biosynthesis (PEPTIDE BIOSYNTHESIS, NUCLEIC ACID-INDEPENDENT) mechanisms carried out by PEPTIDE SYNTHASES and PEPTIDYLTRANSFERASES. Further modifications of peptide chains yield functional peptide and protein molecules. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat CTD 2074 Genes GS263486: Gastrins interacting with Rattus norvegicus associated genes (MeSH:D005755) in CTD Figure Label: Gastrins R.n. Species: Rattus norvegicus  Data Points: 2074  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Gastrins' (D005755). Incorporates data from 2291 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 469 Genes GS136964: weight loss response 2 (Wtlr2, Published QTL Chr 16) Figure Label: QTL-Wtlr2-Mouse-Chr 16 Species: Mus musculus  Data Points: 469  Description: QTL associated with weight loss response 2. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (31984189) Available to: Everyone (Tier II)
	Tier I Mouse CTD 1218 Genes GS258983: resveratrol interacting with Mus musculus associated genes (MeSH:C059514) in CTD Figure Label: resveratrol M.m. Species: Mus musculus  Data Points: 1218  Description: Genes associated with Mus musculus that interact with the MeSH term 'resveratrol' (C059514). Incorporates data from 10 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 3292 Genes GS123595: Progesterone interacting with Ovis aries associated genes (MeSH:D011374) in CTD Figure Label: Progesterone O.a. Species: Homo sapiens  Data Points: 3292  Description: Genes associated with Ovis aries that interact with the MeSH term 'Progesterone' (D011374). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 2386 Genes GS125959: Cisplatin interacting with Homo sapiens associated genes (MeSH:D002945) in CTD Figure Label: Cisplatin H.s. Species: Homo sapiens  Data Points: 2386  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Cisplatin' (D002945). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 770 Genes GS324258: GO:0019538 protein metabolic process Figure Label: GO:0019538 Species: Rattus norvegicus  Data Points: 770  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "protein metabolic process", which is defined as "The chemical reactions and pathways involving a protein. Includes protein modification." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 8166 Genes GS241165: [MeSH] Protein Biosynthesis : D014176 Figure Label: Protein Biosynthesis Species: Homo sapiens  Data Points: 8166  Description: The biosynthesis of PEPTIDES and PROTEINS on RIBOSOMES, directed by MESSENGER RNA, via TRANSFER RNA that is charged with standard proteinogenic AMINO ACIDS. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Zebrafish CTD 127 Genes GS261935: nickel chloride interacting with Danio rerio associated genes (MeSH:C022838) in CTD Figure Label: nickel chloride D.r. Species: Danio rerio  Data Points: 127  Description: Genes associated with Danio rerio that interact with the MeSH term 'nickel chloride' (C022838). Incorporates data from 7 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 396 Genes GS135707: diabetes susceptibility QTL 3 (Dbsq3, Published QTL Chr 16) Figure Label: QTL-Dbsq3-Mouse-Chr 16 Species: Mus musculus  Data Points: 396  Description: QTL associated with diabetes susceptibility QTL 3. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (11616475) Available to: Everyone (Tier II)
	Tier II Human 392 Genes GS241062: [MeSH] Chromosomes, Human, Pair 22 : D002892 Figure Label: Chromosomes, Human, Pair 22 Species: Homo sapiens  Data Points: 392  Description: A specific pair of GROUP G CHROMOSOMES of the human chromosome classification. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Zebrafish CTD 322 Genes GS261594: Tretinoin interacting with Danio rerio associated genes (MeSH:D014212) in CTD Figure Label: Tretinoin D.r. Species: Danio rerio  Data Points: 322  Description: Genes associated with Danio rerio that interact with the MeSH term 'Tretinoin' (D014212). Incorporates data from 70 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 4318 Genes GS127051: Silicon Dioxide interacting with Homo sapiens associated genes (MeSH:D012822) in CTD Figure Label: Silicon Dioxide H.s. Species: Homo sapiens  Data Points: 4318  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Silicon Dioxide' (D012822). Incorporates data from 9 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse GO 3540 Genes GS333350: GO:0043227 membrane-bounded organelle Figure Label: GO:0043227 Species: Mus musculus  Data Points: 3540  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "membrane-bounded organelle", which is defined as "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 2708 Genes GS124165: Hydrogen Peroxide interacting with Homo sapiens associated genes (MeSH:D006861) in CTD Figure Label: Hydrogen Peroxide H.s. Species: Homo sapiens  Data Points: 2708  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Hydrogen Peroxide' (D006861). Incorporates data from 4 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 758 Genes GS126989: Hydralazine interacting with Homo sapiens associated genes (MeSH:D006830) in CTD Figure Label: Hydralazine H.s. Species: Homo sapiens  Data Points: 758  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Hydralazine' (D006830). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat CTD 137 Genes GS263473: Glutathione interacting with Rattus norvegicus associated genes (MeSH:D005978) in CTD Figure Label: Glutathione R.n. Species: Rattus norvegicus  Data Points: 137  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Glutathione' (D005978). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 255 Genes GS260062: tallow interacting with Mus musculus associated genes (MeSH:C013698) in CTD Figure Label: tallow M.m. Species: Mus musculus  Data Points: 255  Description: Genes associated with Mus musculus that interact with the MeSH term 'tallow' (C013698). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Zebrafish CTD 834 Genes GS261715: Dioxins interacting with Danio rerio associated genes (MeSH:D004147) in CTD Figure Label: Dioxins D.r. Species: Danio rerio  Data Points: 834  Description: Genes associated with Danio rerio that interact with the MeSH term 'Dioxins' (D004147). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 761 Genes GS251323: Hazardous Substances interacting with Homo sapiens associated genes (MeSH:D015386) in CTD Figure Label: Hazardous Substances H.s. Species: Homo sapiens  Data Points: 761  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Hazardous Substances' (D015386). Incorporates data from 775 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 657 Genes GS324204: GO:0044267 cellular protein metabolic process Figure Label: GO:0044267 Species: Rattus norvegicus  Data Points: 657  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular protein metabolic process", which is defined as "The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse CTD 180 Genes GS256076: Tacrolimus interacting with Mus musculus associated genes (MeSH:D016559) in CTD Figure Label: Tacrolimus M.m. Species: Mus musculus  Data Points: 180  Description: Genes associated with Mus musculus that interact with the MeSH term 'Tacrolimus' (D016559). Incorporates data from 5 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 193 Genes GS227454: MSigDB Geneset - GSE10239_NAIVE_VS_KLRG1HIGH_EFF_CD8_TCELL_DN Figure Label: GSE10239_NAIVE_VS_KLRG1HIGH_EFF_CD8_TCELL_DN Species: Mus musculus  Data Points: 193  Description: GSE10239_NAIVE_VS_KLRG1HIGH_EFF_CD8_TCELL_DN Genes down-regulated in comparison of naive CD8 T cells versus effector CD8 T cells KLRG1 high [GeneID=10219]. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 5821 Genes GS239290: [MeSH] Cell Line, Transformed : D002461 Figure Label: Cell Line, Transformed Species: Homo sapiens  Data Points: 5821  Description: Eukaryotic cell line obtained in a quiescent or stationary phase which undergoes conversion to a state of unregulated growth in culture, resembling an in vitro tumor. It occurs spontaneously or through interaction with viruses, oncogenes, radiation, or drugs/chemicals. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat CTD 1145 Genes GS267254: pirinixic acid interacting with Rattus norvegicus associated genes (MeSH:C006253) in CTD Figure Label: pirinixic acid R.n. Species: Rattus norvegicus  Data Points: 1145  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'pirinixic acid' (C006253). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 2585 Genes GS318486: GO:0005515 protein binding Figure Label: GO:0005515 Species: Rattus norvegicus  Data Points: 2585  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "protein binding", which is defined as "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 188 Genes GS227198: MSigDB Geneset - MTOR_UP.N4.V1_UP Figure Label: MTOR_UP.N4.V1_UP Species: Homo sapiens  Data Points: 188  Description: MTOR_UP.N4.V1_UP Genes up-regulated in CEM-C1 cells (T-CLL) by everolimus [PubChem=6442177], an mTOR pathway inhibitor. c6 - Genesets containing oncogenic signatures defined directly from microarray gene expression data from cancer gene perturbations. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Mouse 320 Genes GS136205: lung tumor shape-determining 7 (Ltsd7, Published QTL Chr 16) Figure Label: QTL-Ltsd7-Mouse-Chr 16 Species: Mus musculus  Data Points: 320  Description: QTL associated with lung tumor shape-determining 7. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (6659238) Available to: Everyone (Tier II)
	Tier I Human 197 Genes GS229792: MSigDB Geneset - GSE9006_TYPE_1_VS_TYPE_2_DIABETES_PBMC_AT_DX_UP Figure Label: GSE9006_TYPE_1_VS_TYPE_2_DIABETES_PBMC_AT_DX_UP Species: Homo sapiens  Data Points: 197  Description: GSE9006_TYPE_1_VS_TYPE_2_DIABETES_PBMC_AT_DX_UP Genes up-regulated in peripheral blood mononuclear cells (PBMC) from patients with type 1 diabetes at the time of diagnosis versus those with type 2 diabetes at the time of diagnosis. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse GO 3072 Genes GS336501: GO:0043231 intracellular membrane-bounded organelle Figure Label: GO:0043231 Species: Mus musculus  Data Points: 3072  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular membrane-bounded organelle", which is defined as "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse GO 370 Genes GS331700: GO:0005783 endoplasmic reticulum Figure Label: GO:0005783 Species: Mus musculus  Data Points: 370  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "endoplasmic reticulum", which is defined as "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached)." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 3339 Genes GS126466: Quercetin interacting with Homo sapiens associated genes (MeSH:D011794) in CTD Figure Label: Quercetin H.s. Species: Homo sapiens  Data Points: 3339  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Quercetin' (D011794). Incorporates data from 6 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Rat 453 Genes GS224748: Food consumption QTL 27 (Foco27 Published QTL Chr 11) Figure Label: QTL-Foco27-Rat-Chr 11 Species: Rattus norvegicus  Data Points: 453  Description: QTL Associated with Consumption level. On Chromosome 11 with a LOD score= 16.2, p-value =0.001. From a(n) intercross of Available to: Everyone (Tier II)
	Tier I Rat GO 50 Genes GS322147: GO:0030163 protein catabolic process Figure Label: GO:0030163 Species: Rattus norvegicus  Data Points: 50  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "protein catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 3845 Genes GS126898: Methyl Methanesulfonate interacting with Homo sapiens associated genes (MeSH:D008741) in CTD Figure Label: Methyl Methanesulfonate H.s. Species: Homo sapiens  Data Points: 3845  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Methyl Methanesulfonate' (D008741). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 14167 Genes GS240208: [MeSH] Amino Acid Sequence : D000595 Figure Label: Amino Acid Sequence Species: Homo sapiens  Data Points: 14167  Description: The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 6268 Genes GS239503: [MeSH] Ubiquitination : D054875 Figure Label: Ubiquitination Species: Homo sapiens  Data Points: 6268  Description: The act of ligating UBIQUITINS to PROTEINS to form ubiquitin-protein ligase complexes to label proteins for transport to the PROTEASOME ENDOPEPTIDASE COMPLEX where proteolysis occurs. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse CTD 725 Genes GS256226: Trichloroethylene interacting with Mus musculus associated genes (MeSH:D014241) in CTD Figure Label: Trichloroethylene M.m. Species: Mus musculus  Data Points: 725  Description: Genes associated with Mus musculus that interact with the MeSH term 'Trichloroethylene' (D014241). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 2588 Genes GS319198: GO:0043226 organelle Figure Label: GO:0043226 Species: Rattus norvegicus  Data Points: 2588  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "organelle", which is defined as "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 1499 Genes GS121893: Vitamin E interacting with Homo sapiens associated genes (MeSH:D014810) in CTD Figure Label: Vitamin E H.s. Species: Homo sapiens  Data Points: 1499  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Vitamin E' (D014810). Incorporates data from 6 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 435 Genes GS320206: GO:0042981 regulation of apoptotic process Figure Label: GO:0042981 Species: Rattus norvegicus  Data Points: 435  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "regulation of apoptotic process", which is defined as "Any process that modulates the occurrence or rate of cell death by apoptotic process." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 1542 Genes GS327899: GO:0006807 nitrogen compound metabolic process Figure Label: GO:0006807 Species: Rattus norvegicus  Data Points: 1542  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "nitrogen compound metabolic process", which is defined as "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 13572 Genes GS242639: [MeSH] Metabolic Phenomena : D055754 Figure Label: Metabolic Phenomena Species: Homo sapiens  Data Points: 13572  Description: The CHEMICAL PROCESSES that occur within the cells, tissues, or an organism and related temporal, spatial, qualitative, and quantitative concepts. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 10 Genes GS320212: GO:0035966 response to topologically incorrect protein Figure Label: GO:0035966 Species: Rattus norvegicus  Data Points: 10  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to topologically incorrect protein", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse CTD 1019 Genes GS256354: Silicon Dioxide interacting with Mus musculus associated genes (MeSH:D012822) in CTD Figure Label: Silicon Dioxide M.m. Species: Mus musculus  Data Points: 1019  Description: Genes associated with Mus musculus that interact with the MeSH term 'Silicon Dioxide' (D012822). Incorporates data from 5 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 6 Genes GS320211: GO:0035967 cellular response to topologically incorrect protein Figure Label: GO:0035967 Species: Rattus norvegicus  Data Points: 6  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular response to topologically incorrect protein", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 195 Genes GS229185: MSigDB Geneset - GSE1432_6H_VS_24H_IFNG_MICROGLIA_DN Figure Label: GSE1432_6H_VS_24H_IFNG_MICROGLIA_DN Species: Homo sapiens  Data Points: 195  Description: GSE1432_6H_VS_24H_IFNG_MICROGLIA_DN Genes down-regulated in comparison of microglia cells 6 h after stimulation with IFNG [GeneID=3458] versus microglia cells 24 h after the stimulation. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 168 Genes GS323748: GO:0006508 proteolysis Figure Label: GO:0006508 Species: Rattus norvegicus  Data Points: 168  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "proteolysis", which is defined as "The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 1 Genes GS316282: GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Figure Label: GO:0006515 Species: Rattus norvegicus  Data Points: 1  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "protein quality control for misfolded or incompletely synthesized proteins", which is defined as "The chemical reactions and pathways resulting in the breakdown of misfolded or attenuated proteins." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse 190 Genes GS227715: MSigDB Geneset - GSE17721_LPS_VS_CPG_2H_BMDM_DN Figure Label: GSE17721_LPS_VS_CPG_2H_BMDM_DN Species: Mus musculus  Data Points: 190  Description: GSE17721_LPS_VS_CPG_2H_BMDM_DN Genes down-regulated in comparison of dendritic cells (DC) stimulated with LPS (TLR4 agonist) at 2 h versus DC cells stimulated with CpG DNA (TLR9 agonist) at 2 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 3831 Genes GS324634: GO:0044464 cell part Figure Label: GO:0044464 Species: Rattus norvegicus  Data Points: 3831  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cell part", which is defined as "Any constituent part of a cell, the basic structural and functional unit of all organisms." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse GO 3999 Genes GS333347: GO:0043229 intracellular organelle Figure Label: GO:0043229 Species: Mus musculus  Data Points: 3999  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular organelle", which is defined as "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse CTD 5545 Genes GS260331: sinefungin interacting with Mus musculus associated genes (MeSH:C006235) in CTD Figure Label: sinefungin M.m. Species: Mus musculus  Data Points: 5545  Description: Genes associated with Mus musculus that interact with the MeSH term 'sinefungin' (C006235). Incorporates data from 6366 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 16597 Genes GS235287: [MeSH] Proteins : D011506 Figure Label: Proteins Species: Homo sapiens  Data Points: 16597  Description: Linear POLYPEPTIDES that are synthesized on RIBOSOMES and may be further modified, crosslinked, cleaved, or assembled into complex proteins with several subunits. The specific sequence of AMINO ACIDS determines the shape the polypeptide will take, during PROTEIN FOLDING, and the function of the protein. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse CTD 793 Genes GS257772: S-2-pentyl-4-pentynoic hydroxamic acid interacting with Mus musculus associated genes (MeSH:C513635) in CTD Figure Label: S-2-pentyl-4-pentynoic hydroxamic ac... M.m. Species: Mus musculus  Data Points: 793  Description: Genes associated with Mus musculus that interact with the MeSH term 'S-2-pentyl-4-pentynoic hydroxamic acid' (C513635). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 3215 Genes GS123167: cobaltous chloride interacting with Homo sapiens associated genes (MeSH:C018021) in CTD Figure Label: cobaltous chloride H.s. Species: Homo sapiens  Data Points: 3215  Description: Genes associated with Homo sapiens that interact with the MeSH term 'cobaltous chloride' (C018021). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 5877 Genes GS126658: 2,3-dimethylhydroquinone interacting with Homo sapiens associated genes (MeSH:C516077) in CTD Figure Label: 2,3-dimethylhydroquinone H.s. Species: Homo sapiens  Data Points: 5877  Description: Genes associated with Homo sapiens that interact with the MeSH term '2,3-dimethylhydroquinone' (C516077). Incorporates data from 6043 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 16030 Genes GS243659: [MeSH] RNA, Messenger : D012333 Figure Label: RNA, Messenger Species: Homo sapiens  Data Points: 16030  Description: RNA sequences that serve as templates for protein synthesis. Bacterial mRNAs are generally primary transcripts in that they do not require post-transcriptional processing. Eukaryotic mRNA is synthesized in the nucleus and must be exported to the cytoplasm for translation. Most eukaryotic mRNAs have a sequence of polyadenylic acid at the 3' end, referred to as the poly(A) tail. The function of this tail is not known for certain, but it may play a role in the export of mature mRNA from the nucleus as well as in helping stabilize some mRNA molecules by retarding their degradation in the cytoplasm. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 264 Genes GS321638: GO:0044248 cellular catabolic process Figure Label: GO:0044248 Species: Rattus norvegicus  Data Points: 264  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 194 Genes GS229003: MSigDB Geneset - GSE3982_CENT_MEMORY_CD4_TCELL_VS_TH1_DN Figure Label: GSE3982_CENT_MEMORY_CD4_TCELL_VS_TH1_DN Species: Homo sapiens  Data Points: 194  Description: GSE3982_CENT_MEMORY_CD4_TCELL_VS_TH1_DN Genes down-regulated in comparison of central memory CD4 [GeneID=920] T cells versus Th1 cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human 197 Genes GS229883: MSigDB Geneset - HALLMARK_MTORC1_SIGNALING Figure Label: HALLMARK_MTORC1_SIGNALING Species: Homo sapiens  Data Points: 197  Description: HALLMARK_MTORC1_SIGNALING Genes up-regulated through activation of mTORC1 complex. h - Hallmark genesets containing coherently expressed signatures derived by aggregating many MSigDB gene sets to represent well-defined biological states or processes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 17816 Genes GS235305: [MeSH] DNA, Complementary : D018076 Figure Label: DNA, Complementary Species: Homo sapiens  Data Points: 17816  Description: Single-stranded complementary DNA synthesized from an RNA template by the action of RNA-dependent DNA polymerase. cDNA (i.e., complementary DNA, not circular DNA, not C-DNA) is used in a variety of molecular cloning experiments as well as serving as a specific hybridization probe. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 10126 Genes GS237194: [MeSH] Physiological Phenomena : D010829 Figure Label: Physiological Phenomena Species: Homo sapiens  Data Points: 10126  Description: The functions and properties of living organisms, including both the physical and chemical factors and processes, supporting life in single- or multi-cell organisms from their origin through the progression of life. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human CTD 272 Genes GS254309: cidofovir interacting with Homo sapiens associated genes (MeSH:C059262) in CTD Figure Label: cidofovir H.s. Species: Homo sapiens  Data Points: 272  Description: Genes associated with Homo sapiens that interact with the MeSH term 'cidofovir' (C059262). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 2077 Genes GS257111: Clofibrate interacting with Mus musculus associated genes (MeSH:D002994) in CTD Figure Label: Clofibrate M.m. Species: Mus musculus  Data Points: 2077  Description: Genes associated with Mus musculus that interact with the MeSH term 'Clofibrate' (D002994). Incorporates data from 18 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 11962 Genes GS245976: [MeSH] Cellular Structures : D022082 Figure Label: Cellular Structures Species: Homo sapiens  Data Points: 11962  Description: Components of a cell. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 18212 Genes GS240572: [MeSH] DNA : D004247 Figure Label: DNA Species: Homo sapiens  Data Points: 18212  Description: A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine). Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 11733 Genes GS241930: [MeSH] Mutation : D009154 Figure Label: Mutation Species: Homo sapiens  Data Points: 11733  Description: Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 4278 Genes GS315977: GO:0003674 molecular_function Figure Label: GO:0003674 Species: Rattus norvegicus  Data Points: 4278  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "molecular_function", which is defined as "The actions of a single gene product or complex at the molecular level consisting of a single biochemical activity or multiple causally linked biochemical activities. A given gene product may exhibit one or more molecular functions." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 264 Genes GS232704: PC Geneset - "V$COREBINDINGFACTOR_Q6" pathway genes Figure Label: V$COREBINDINGFACTOR_Q6 Species: Homo sapiens  Data Points: 264  Description: Pathway Commons (PC) Geneset. This geneset contains genes that participate in the "V$COREBINDINGFACTOR_Q6" pathway. This set was automatically constructed using the PC API. The original source of this geneset is TRANSFAC. gene2pc v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Mouse 476 Genes GS135393: body growth early QTL 15 (Bgeq15, Published QTL Chr 16) Figure Label: QTL-Bgeq15-Mouse-Chr 16 Species: Mus musculus  Data Points: 476  Description: QTL associated with body growth early QTL 15. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (22956575) Available to: Everyone (Tier II)
	Tier II Human 15234 Genes GS236911: [MeSH] Transcription, Genetic : D014158 Figure Label: Transcription, Genetic Species: Homo sapiens  Data Points: 15234  Description: The biosynthesis of RNA carried out on a template of DNA. The biosynthesis of DNA from an RNA template is called REVERSE TRANSCRIPTION. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 16814 Genes GS235942: [MeSH] Genetic Processes : D039361 Figure Label: Genetic Processes Species: Homo sapiens  Data Points: 16814  Description: Those biological processes that are involved in the transmission of hereditary traits from one organism to another. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 2422 Genes GS316610: GO:0005737 cytoplasm Figure Label: GO:0005737 Species: Rattus norvegicus  Data Points: 2422  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cytoplasm", which is defined as "All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse GO 983 Genes GS335749: GO:0012505 endomembrane system Figure Label: GO:0012505 Species: Mus musculus  Data Points: 983  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "endomembrane system", which is defined as "A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 606 Genes GS316243: GO:0008219 cell death Figure Label: GO:0008219 Species: Rattus norvegicus  Data Points: 606  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cell death", which is defined as "Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538)." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 19180 Genes GS243722: [MeSH] Genetic Structures : D040342 Figure Label: Genetic Structures Species: Homo sapiens  Data Points: 19180  Description: The biological objects that contain genetic information and that are involved in transmitting genetically encoded traits from one organism to another. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 17454 Genes GS241889: [MeSH] Molecular Structure : D015394 Figure Label: Molecular Structure Species: Homo sapiens  Data Points: 17454  Description: The location of the atoms, groups or ions relative to one another in a molecule, as well as the number, type and location of covalent bonds. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Rat 458 Genes GS223490: Polydactyly-luxate syndrome (PLS) morphotypes QTL 4 (Plsm4 Published QTL Chr 11) Figure Label: QTL-Plsm4-Rat-Chr 11 Species: Rattus norvegicus  Data Points: 458  Description: QTL Associated with Limb morphology. On Chromosome 11 with a LOD score= , p-value =3.00E-04. From a(n) intercross of SHR/OlaxBN-lx/Cub Available to: Everyone (Tier II)
	Tier I Rat GO 3 Genes GS318780: GO:0051787 misfolded protein binding Figure Label: GO:0051787 Species: Rattus norvegicus  Data Points: 3  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "misfolded protein binding", which is defined as "Interacting selectively and non-covalently with a misfolded protein." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 780 Genes GS322663: GO:0012505 endomembrane system Figure Label: GO:0012505 Species: Rattus norvegicus  Data Points: 780  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "endomembrane system", which is defined as "A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse GO 4951 Genes GS332425: GO:0005622 intracellular Figure Label: GO:0005622 Species: Mus musculus  Data Points: 4951  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular", which is defined as "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat CTD 1943 Genes GS266540: nickel monoxide interacting with Rattus norvegicus associated genes (MeSH:C028007) in CTD Figure Label: nickel monoxide R.n. Species: Rattus norvegicus  Data Points: 1943  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'nickel monoxide' (C028007). Incorporates data from 16 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 3054 Genes GS257124: Choline interacting with Mus musculus associated genes (MeSH:D002794) in CTD Figure Label: Choline M.m. Species: Mus musculus  Data Points: 3054  Description: Genes associated with Mus musculus that interact with the MeSH term 'Choline' (D002794). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 1617 Genes GS326942: GO:0010033 response to organic substance Figure Label: GO:0010033 Species: Rattus norvegicus  Data Points: 1617  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to organic substance", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 16633 Genes GS235061: [MeSH] Amino Acids, Peptides, and Proteins : D000602 Figure Label: Amino Acids, Peptides, and Proteins Species: Homo sapiens  Data Points: 16633  Description: Amino acids and chains of amino acids connected by peptide linkages. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 17923 Genes GS234621: [MeSH] Chemical Actions and Uses : D020164 Figure Label: Chemical Actions and Uses Species: Homo sapiens  Data Points: 17923  Description: A group of pharmacologic activities, effects on living systems and the environment, and modes of employment of drugs and chemicals. They are broken into actions, which describe their effects, and uses, which describe how they are employed. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse CTD 3927 Genes GS256187: Valproic Acid interacting with Mus musculus associated genes (MeSH:D014635) in CTD Figure Label: Valproic Acid M.m. Species: Mus musculus  Data Points: 3927  Description: Genes associated with Mus musculus that interact with the MeSH term 'Valproic Acid' (D014635). Incorporates data from 53 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 315 Genes GS135807: autoimmune epididymitis resistance 1 (Epd1, Published QTL Chr 16) Figure Label: QTL-Epd1-Mouse-Chr 16 Species: Mus musculus  Data Points: 315  Description: QTL associated with autoimmune epididymitis resistance 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (5706639) Available to: Everyone (Tier II)
	Tier I Human CTD 304 Genes GS126565: chloroacetaldehyde interacting with Homo sapiens associated genes (MeSH:C004656) in CTD Figure Label: chloroacetaldehyde H.s. Species: Homo sapiens  Data Points: 304  Description: Genes associated with Homo sapiens that interact with the MeSH term 'chloroacetaldehyde' (C004656). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 1948 Genes GS321542: GO:0044444 cytoplasmic part Figure Label: GO:0044444 Species: Rattus norvegicus  Data Points: 1948  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cytoplasmic part", which is defined as "Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 469 Genes GS136576: radiation-induced apoptosis 1 (Rapop1, Published QTL Chr 16) Figure Label: QTL-Rapop1-Mouse-Chr 16 Species: Mus musculus  Data Points: 469  Description: QTL associated with radiation-induced apoptosis 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (31984189) Available to: Everyone (Tier II)
	Tier I Rat GO 503 Genes GS322662: GO:0012501 programmed cell death Figure Label: GO:0012501 Species: Rattus norvegicus  Data Points: 503  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "programmed cell death", which is defined as "A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier III Mouse 565 Genes GS216663: Differential-Expression SOD1 Microglia D100 Figure Label: SOD1 Microglia D100 Species: Mus musculus  Data Points: 565  Description: Differential-Expression Comparison of Mutant SOD1 Microglia RNA-Seq Data Relative to Control Microglia at D100 with an FDR<0.05, uploaded with p-value. Available to: Everyone (Tier III)
	Tier I Mouse CTD 7038 Genes GS255863: Nanotubes, Carbon interacting with Mus musculus associated genes (MeSH:D037742) in CTD Figure Label: Nanotubes, Carbon M.m. Species: Mus musculus  Data Points: 7038  Description: Genes associated with Mus musculus that interact with the MeSH term 'Nanotubes, Carbon' (D037742). Incorporates data from 26 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 304 Genes GS255627: carbinoxamine interacting with Homo sapiens associated genes (MeSH:C004649) in CTD Figure Label: carbinoxamine H.s. Species: Homo sapiens  Data Points: 304  Description: Genes associated with Homo sapiens that interact with the MeSH term 'carbinoxamine' (C004649). Incorporates data from 306 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 1812 Genes GS323040: GO:0044237 cellular metabolic process Figure Label: GO:0044237 Species: Rattus norvegicus  Data Points: 1812  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular metabolic process", which is defined as "The chemical reactions and pathways by which individual cells transform chemical substances." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 3 Genes GS316965: GO:0036503 ERAD pathway Figure Label: GO:0036503 Species: Rattus norvegicus  Data Points: 3  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "ERAD pathway", which is defined as "The protein catabolic pathway which targets endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. It begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein modifications necessary for correct substrate transfer (e.g. ubiquitination), transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 15712 Genes GS236298: [MeSH] Gene Expression : D015870 Figure Label: Gene Expression Species: Homo sapiens  Data Points: 15712  Description: The phenotypic manifestation of a gene or genes by the processes of GENETIC TRANSCRIPTION and GENETIC TRANSLATION. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 1298 Genes GS321951: GO:0043170 macromolecule metabolic process Figure Label: GO:0043170 Species: Rattus norvegicus  Data Points: 1298  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "macromolecule metabolic process", which is defined as "The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Zebrafish CTD 683 Genes GS261979: retinylamine interacting with Danio rerio associated genes (MeSH:C009167) in CTD Figure Label: retinylamine D.r. Species: Danio rerio  Data Points: 683  Description: Genes associated with Danio rerio that interact with the MeSH term 'retinylamine' (C009167). Incorporates data from 1179 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse GO 4257 Genes GS333351: GO:0043226 organelle Figure Label: GO:0043226 Species: Mus musculus  Data Points: 4257  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "organelle", which is defined as "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 15970 Genes GS237679: [MeSH] Genetic Code : D005815 Figure Label: Genetic Code Species: Homo sapiens  Data Points: 15970  Description: The meaning ascribed to the BASE SEQUENCE with respect to how it is translated into AMINO ACID SEQUENCE. The start, stop, and order of amino acids of a protein is specified by consecutive triplets of nucleotides called codons (CODON). Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 189 Genes GS229857: MSigDB Geneset - GSE3982_EFF_MEMORY_VS_CENT_MEMORY_CD4_TCELL_UP Figure Label: GSE3982_EFF_MEMORY_VS_CENT_MEMORY_CD4_TCELL_UP Species: Homo sapiens  Data Points: 189  Description: GSE3982_EFF_MEMORY_VS_CENT_MEMORY_CD4_TCELL_UP Genes up-regulated in comparison of effective memory CD4 [GeneID=920] T cells versus central memory CD4 [GeneID=920] T cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 1074 Genes GS321712: GO:0006950 response to stress Figure Label: GO:0006950 Species: Rattus norvegicus  Data Points: 1074  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to stress", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 253 Genes GS230451: MSigDB Geneset - V$TTF1_Q6 Figure Label: V$TTF1_Q6 Species: Homo sapiens  Data Points: 253  Description: V$TTF1_Q6 Genes with promoter regions [-2kb,2kb] around transcription start site containing the motif NNNNCAAGNRNN which matches annotation for TITF1: thyroid transcription factor 1 c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 13379 Genes GS240987: [MeSH] Metabolism : D008660 Figure Label: Metabolism Species: Homo sapiens  Data Points: 13379  Description: The chemical reactions that occur within the cells, tissues, or an organism. These processes include both the biosynthesis (ANABOLISM) and the breakdown (CATABOLISM) of organic materials utilized by the living organism. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse CTD 2834 Genes GS260203: titanium dioxide interacting with Mus musculus associated genes (MeSH:C009495) in CTD Figure Label: titanium dioxide M.m. Species: Mus musculus  Data Points: 2834  Description: Genes associated with Mus musculus that interact with the MeSH term 'titanium dioxide' (C009495). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 2559 Genes GS125371: Cadmium Chloride interacting with Platichthys flesus associated genes (MeSH:D019256) in CTD Figure Label: Cadmium Chloride P.f. Species: Homo sapiens  Data Points: 2559  Description: Genes associated with Platichthys flesus that interact with the MeSH term 'Cadmium Chloride' (D019256). Incorporates data from 4 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat CTD 43 Genes GS262981: Quartz interacting with Rattus norvegicus associated genes (MeSH:D011791) in CTD Figure Label: Quartz R.n. Species: Rattus norvegicus  Data Points: 43  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Quartz' (D011791). Incorporates data from 477 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat CTD 582 Genes GS265292: rosiglitazone interacting with Rattus norvegicus associated genes (MeSH:C089730) in CTD Figure Label: rosiglitazone R.n. Species: Rattus norvegicus  Data Points: 582  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'rosiglitazone' (C089730). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 13540 Genes GS241850: [MeSH] Genetic Variation : D014644 Figure Label: Genetic Variation Species: Homo sapiens  Data Points: 13540  Description: Genotypic differences observed among individuals in a population. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 187 Genes GS228575: MSigDB Geneset - GSE17974_0H_VS_6H_IN_VITRO_ACT_CD4_TCELL_DN Figure Label: GSE17974_0H_VS_6H_IN_VITRO_ACT_CD4_TCELL_DN Species: Homo sapiens  Data Points: 187  Description: GSE17974_0H_VS_6H_IN_VITRO_ACT_CD4_TCELL_DN Genes down-regulated in comparison of untreated CD4 [GeneID=920] T cells at 0 h versus the untreated cells at 6 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 1619 Genes GS323670: GO:0051716 cellular response to stimulus Figure Label: GO:0051716 Species: Rattus norvegicus  Data Points: 1619  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular response to stimulus", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 482 Genes GS135961: HDL QTL 28 (Hdlq28, Published QTL Chr 16) Figure Label: QTL-Hdlq28-Mouse-Chr 16 Species: Mus musculus  Data Points: 482  Description: QTL associated with HDL QTL 28. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (29406628) Available to: Everyone (Tier II)
	Tier I Rat GO 1027 Genes GS318831: GO:0070887 cellular response to chemical stimulus Figure Label: GO:0070887 Species: Rattus norvegicus  Data Points: 1027  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular response to chemical stimulus", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 272 Genes GS254310: cevimeline interacting with nan associated genes (MeSH:C059240) in CTD Figure Label: cevimeline n. Species: Homo sapiens  Data Points: 272  Description: Genes associated with nan that interact with the MeSH term 'cevimeline' (C059240). Incorporates data from 275 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 489 Genes GS316017: GO:0006915 apoptotic process Figure Label: GO:0006915 Species: Rattus norvegicus  Data Points: 489  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "apoptotic process", which is defined as "A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 315 Genes GS136175: locomotor activity 2 (Loca2, Published QTL Chr 16) Figure Label: QTL-Loca2-Mouse-Chr 16 Species: Mus musculus  Data Points: 315  Description: QTL associated with locomotor activity 2. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (5682589) Available to: Everyone (Tier II)
	Tier I Human CTD 1092 Genes GS253781: chloropicrin interacting with Homo sapiens associated genes (MeSH:C100187) in CTD Figure Label: chloropicrin H.s. Species: Homo sapiens  Data Points: 1092  Description: Genes associated with Homo sapiens that interact with the MeSH term 'chloropicrin' (C100187). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human 194 Genes GS230046: MSigDB Geneset - GSE13411_NAIVE_VS_MEMORY_BCELL_DN Figure Label: GSE13411_NAIVE_VS_MEMORY_BCELL_DN Species: Homo sapiens  Data Points: 194  Description: GSE13411_NAIVE_VS_MEMORY_BCELL_DN Genes down-regulated in comparison of naive B cells versus memory B cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 10111 Genes GS235272: [MeSH] Membrane Proteins : D008565 Figure Label: Membrane Proteins Species: Homo sapiens  Data Points: 10111  Description: Proteins which are found in membranes including cellular and intracellular membranes. They consist of two types, peripheral and integral proteins. They include most membrane-associated enzymes, antigenic proteins, transport proteins, and drug, hormone, and lectin receptors. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat CTD 272 Genes GS263287: Metformin interacting with Rattus norvegicus associated genes (MeSH:D008687) in CTD Figure Label: Metformin R.n. Species: Rattus norvegicus  Data Points: 272  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Metformin' (D008687). Incorporates data from 16 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat CTD 2038 Genes GS262521: Cadmium Chloride interacting with Rattus norvegicus associated genes (MeSH:D019256) in CTD Figure Label: Cadmium Chloride R.n. Species: Rattus norvegicus  Data Points: 2038  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Cadmium Chloride' (D019256). Incorporates data from 10 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 254 Genes GS252082: NSC668394 interacting with Homo sapiens associated genes (MeSH:C570897) in CTD Figure Label: NSC668394 H.s. Species: Homo sapiens  Data Points: 254  Description: Genes associated with Homo sapiens that interact with the MeSH term 'NSC668394' (C570897). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 1107 Genes GS324223: GO:0044260 cellular macromolecule metabolic process Figure Label: GO:0044260 Species: Rattus norvegicus  Data Points: 1107  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular macromolecule metabolic process", which is defined as "The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse CTD 423 Genes GS256668: Methylmalonic Acid interacting with Mus musculus associated genes (MeSH:D008764) in CTD Figure Label: Methylmalonic Acid M.m. Species: Mus musculus  Data Points: 423  Description: Genes associated with Mus musculus that interact with the MeSH term 'Methylmalonic Acid' (D008764). Incorporates data from 467 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat CTD 582 Genes GS265293: 1-palmitoyl-2-lysophosphatidylcholine interacting with Rattus norvegicus associated genes (MeSH:C089215) in CTD Figure Label: 1-palmitoyl-2-lysophosphatidylcholin... R.n. Species: Rattus norvegicus  Data Points: 582  Description: Genes associated with Rattus norvegicus that interact with the MeSH term '1-palmitoyl-2-lysophosphatidylcholine' (C089215). Incorporates data from 661 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 1817 Genes GS255836: Microcystins interacting with Mus musculus associated genes (MeSH:D052998) in CTD Figure Label: Microcystins M.m. Species: Mus musculus  Data Points: 1817  Description: Genes associated with Mus musculus that interact with the MeSH term 'Microcystins' (D052998). Incorporates data from 2196 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 6093 Genes GS245544: [MeSH] Conserved Sequence : D017124 Figure Label: Conserved Sequence Species: Homo sapiens  Data Points: 6093  Description: A sequence of amino acids in a polypeptide or of nucleotides in DNA or RNA that is similar across multiple species. A known set of conserved sequences is represented by a CONSENSUS SEQUENCE. AMINO ACID MOTIFS are often composed of conserved sequences. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Mouse 431 Genes GS136591: radiation induced thymic lymphoma susceptibility (Ritls, Published QTL Chr 16) Figure Label: QTL-Ritls-Mouse-Chr 16 Species: Mus musculus  Data Points: 431  Description: QTL associated with radiation induced thymic lymphoma susceptibility. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (15913145) Available to: Everyone (Tier II)
	Tier I Zebrafish CTD 254 Genes GS261676: Hydrogen Peroxide interacting with Danio rerio associated genes (MeSH:D006861) in CTD Figure Label: Hydrogen Peroxide D.r. Species: Danio rerio  Data Points: 254  Description: Genes associated with Danio rerio that interact with the MeSH term 'Hydrogen Peroxide' (D006861). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 192 Genes GS229402: MSigDB Geneset - GSE17721_CPG_VS_GARDIQUIMOD_2H_BMDM_UP Figure Label: GSE17721_CPG_VS_GARDIQUIMOD_2H_BMDM_UP Species: Mus musculus  Data Points: 192  Description: GSE17721_CPG_VS_GARDIQUIMOD_2H_BMDM_UP Genes up-regulated in comparison of dendritic cells (DC) stimulated with CpG DNA (TLR9 agonist) at 2 h versus DC cells stimulated with Gardiquimod (TLR7 agonist) at 2 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Mouse 476 Genes GS136653: skeletal size (tail length) 7 (Skl7, Published QTL Chr 16) Figure Label: QTL-Skl7-Mouse-Chr 16 Species: Mus musculus  Data Points: 476  Description: QTL associated with skeletal size (tail length) 7. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (22956575) Available to: Everyone (Tier II)
	Tier II Human 6208 Genes GS241064: [MeSH] Ubiquitins : D014452 Figure Label: Ubiquitins Species: Homo sapiens  Data Points: 6208  Description: A family of proteins that are structurally-related to Ubiquitin. Ubiquitins and ubiquitin-like proteins participate in diverse cellular functions, such as protein degradation and HEAT-SHOCK RESPONSE, by conjugation to other proteins. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 197 Genes GS227364: MSigDB Geneset - GSE7460_FOXP3_MUT_VS_WT_ACT_WITH_TGFB_TCONV_UP Figure Label: GSE7460_FOXP3_MUT_VS_WT_ACT_WITH_TGFB_TCONV_UP Species: Homo sapiens  Data Points: 197  Description: GSE7460_FOXP3_MUT_VS_WT_ACT_WITH_TGFB_TCONV_UP Genes up-regulated in comparsion of sfActCD4TGF versus ActCD4TGF (see Fig. 1 in the paper for details). c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human 251 Genes GS230577: MSigDB Geneset - RACCACAR_V$AML_Q6 Figure Label: RACCACAR_V$AML_Q6 Species: Homo sapiens  Data Points: 251  Description: RACCACAR_V$AML_Q6 Genes with promoter regions [-2kb,2kb] around transcription start site containing the motif RACCACAR which matches annotation for RUNX1: runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 7335 Genes GS243335: [MeSH] Chromosomes, Mammalian : D033481 Figure Label: Chromosomes, Mammalian Species: Homo sapiens  Data Points: 7335  Description: Complex nucleoprotein structures which contain the genomic DNA and are part of the CELL NUCLEUS of MAMMALS. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 251 Genes GS232395: PC Geneset - "RACCACAR_V$AML_Q6" pathway genes Figure Label: RACCACAR_V$AML_Q6 Species: Homo sapiens  Data Points: 251  Description: Pathway Commons (PC) Geneset. This geneset contains genes that participate in the "RACCACAR_V$AML_Q6" pathway. This set was automatically constructed using the PC API. The original source of this geneset is TRANSFAC. gene2pc v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Mouse 296 Genes GS136457: postnatal body weight growth 19 (Pbwg19, Published QTL Chr 16) Figure Label: QTL-Pbwg19-Mouse-Chr 16 Species: Mus musculus  Data Points: 296  Description: QTL associated with postnatal body weight growth 19. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (3962915) Available to: Everyone (Tier II)
	Tier I Human 267 Genes GS227743: MSigDB Geneset - chr22q11 Figure Label: chr22q11 Species: Homo sapiens  Data Points: 267  Description: chr22q11 Genes in cytogenetic band chr22q11 c1 - Positional genesets for each human chromosome and cytogenetic band. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse CTD 783 Genes GS256760: Isoproterenol interacting with Mus musculus associated genes (MeSH:D007545) in CTD Figure Label: Isoproterenol M.m. Species: Mus musculus  Data Points: 783  Description: Genes associated with Mus musculus that interact with the MeSH term 'Isoproterenol' (D007545). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 17259 Genes GS239769: [MeSH] Gene Library : D015723 Figure Label: Gene Library Species: Homo sapiens  Data Points: 17259  Description: A large collection of DNA fragments cloned (CLONING, MOLECULAR) from a given organism, tissue, organ, or cell type. It may contain complete genomic sequences (GENOMIC LIBRARY) or complementary DNA sequences, the latter being formed from messenger RNA and lacking intron sequences. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 3117 Genes GS317885: GO:0005622 intracellular Figure Label: GO:0005622 Species: Rattus norvegicus  Data Points: 3117  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular", which is defined as "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 5620 Genes GS244452: [MeSH] Organ Specificity : D009928 Figure Label: Organ Specificity Species: Homo sapiens  Data Points: 5620  Description: Characteristic restricted to a particular organ of the body, such as a cell type, metabolic response or expression of a particular protein or antigen. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 12777 Genes GS238348: [MeSH] Cell Line : D002460 Figure Label: Cell Line Species: Homo sapiens  Data Points: 12777  Description: Established cell cultures that have the potential to propagate indefinitely. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse 197 Genes GS229014: MSigDB Geneset - GSE14350_IL2RB_KO_VS_WT_TEFF_DN Figure Label: GSE14350_IL2RB_KO_VS_WT_TEFF_DN Species: Mus musculus  Data Points: 197  Description: GSE14350_IL2RB_KO_VS_WT_TEFF_DN Genes down-regulated in comparison of effector T cells from IL2RB [GeneID=3560] defficient mice versus effector T cells from wild type animals. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse CTD 2241 Genes GS260200: 4,4'-diaminodiphenylmethane interacting with Mus musculus associated genes (MeSH:C009505) in CTD Figure Label: 4,4'-diaminodiphenylmethane M.m. Species: Mus musculus  Data Points: 2241  Description: Genes associated with Mus musculus that interact with the MeSH term '4,4'-diaminodiphenylmethane' (C009505). Incorporates data from 5 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 16451 Genes GS242107: [MeSH] Chemical Processes : D055599 Figure Label: Chemical Processes Species: Homo sapiens  Data Points: 16451  Description: The reactions and interactions of atoms and molecules, the changes in their structure and composition, and associated energy changes. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 15903 Genes GS243578: [MeSH] Reading Frames : D016364 Figure Label: Reading Frames Species: Homo sapiens  Data Points: 15903  Description: The three possible sequences of CODONS by which GENETIC TRANSLATION may occur from one nucleotide sequence. A segment of mRNA 5'AUCCGA3' could be translated as 5'AUC.. or 5'UCC.. or 5'CCG.., depending on the location of the START CODON. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 253 Genes GS227685: MSigDB Geneset - V$AML_Q6 Figure Label: V$AML_Q6 Species: Homo sapiens  Data Points: 253  Description: V$AML_Q6 Genes with promoter regions [-2kb,2kb] around transcription start site containing the motif NNGKNTGTGGTTWNC which matches annotation for RUNX1: runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat CTD 169 Genes GS266469: coumarin interacting with Rattus norvegicus associated genes (MeSH:C030123) in CTD Figure Label: coumarin R.n. Species: Rattus norvegicus  Data Points: 169  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'coumarin' (C030123). Incorporates data from 8 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse GO 1878 Genes GS332819: GO:0044422 organelle part Figure Label: GO:0044422 Species: Mus musculus  Data Points: 1878  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "organelle part", which is defined as "Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 198 Genes GS229425: MSigDB Geneset - GSE3982_NEUTROPHIL_VS_TH1_DN Figure Label: GSE3982_NEUTROPHIL_VS_TH1_DN Species: Homo sapiens  Data Points: 198  Description: GSE3982_NEUTROPHIL_VS_TH1_DN Genes down-regulated in comparison of neutrophils versus Th1 cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat CTD 1386 Genes GS265571: fullerene C60 interacting with Rattus norvegicus associated genes (MeSH:C069837) in CTD Figure Label: fullerene C60 R.n. Species: Rattus norvegicus  Data Points: 1386  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'fullerene C60' (C069837). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 3104 Genes GS318410: GO:0044424 intracellular part Figure Label: GO:0044424 Species: Rattus norvegicus  Data Points: 3104  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular part", which is defined as "Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 187 Genes GS227350: MSigDB Geneset - GSE29617_CTRL_VS_TIV_FLU_VACCINE_PBMC_2008_DN Figure Label: GSE29617_CTRL_VS_TIV_FLU_VACCINE_PBMC_2008_DN Species: Homo sapiens  Data Points: 187  Description: GSE29617_CTRL_VS_TIV_FLU_VACCINE_PBMC_2008_DN Genes down-regulated in comparison of peripheral blood mononuclear cells (PBMC) from TIV influenza vaccinee before vaccination versus that after the vaccination. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse CTD 437 Genes GS256104: 24,25-Dihydroxyvitamin D 3 interacting with Mus musculus associated genes (MeSH:D015650) in CTD Figure Label: 24,25-Dihydroxyvitamin D 3 M.m. Species: Mus musculus  Data Points: 437  Description: Genes associated with Mus musculus that interact with the MeSH term '24,25-Dihydroxyvitamin D 3' (D015650). Incorporates data from 466 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat CTD 1241 Genes GS263484: Glafenine interacting with Rattus norvegicus associated genes (MeSH:D005897) in CTD Figure Label: Glafenine R.n. Species: Rattus norvegicus  Data Points: 1241  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Glafenine' (D005897). Incorporates data from 24 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Rat 838 Genes GS224302: Insulin dependent diabetes mellitus QTL 17 (Iddm17 Published QTL Chr 11) Figure Label: QTL-Iddm17-Rat-Chr 11 Species: Rattus norvegicus  Data Points: 838  Description: QTL Associated with Glucose level. On Chromosome 11 with a LOD score= , p-value =0.001. From a(n) backcross of LETOxPKDP Available to: Everyone (Tier II)
	Tier I Human 716 Genes GS230591: MSigDB Geneset - GTGCCTT,MIR-506 Figure Label: GTGCCTT,MIR-506 Species: Homo sapiens  Data Points: 716  Description: GTGCCTT,MIR-506 Targets of MicroRNA GTGCCTT,MIR-506 c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse 190 Genes GS228047: MSigDB Geneset - GSE11924_TH1_VS_TH2_CD4_TCELL_DN Figure Label: GSE11924_TH1_VS_TH2_CD4_TCELL_DN Species: Mus musculus  Data Points: 190  Description: GSE11924_TH1_VS_TH2_CD4_TCELL_DN Genes down-regulated in comparison of Th1 cells versus Th17 cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 19359 Genes GS241072: [MeSH] Genetic Phenomena : D055614 Figure Label: Genetic Phenomena Species: Homo sapiens  Data Points: 19359  Description: The processes, properties and biological objects that are involved in maintaining, expressing, and transmitting from one organism to another, genetically encoded traits. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 675 Genes GS237234: [MeSH] Chromosomes, Human, 21-22 and Y : D002904 Figure Label: Chromosomes, Human, 21-22 and Y Species: Homo sapiens  Data Points: 675  Description: The short, acrocentric human chromosomes, called group G in the human chromosome classification. This group consists of chromosome pairs 21 and 22 and the Y chromosome. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 16876 Genes GS243325: [MeSH] Base Sequence : D001483 Figure Label: Base Sequence Species: Homo sapiens  Data Points: 16876  Description: The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 28 Genes GS327637: GO:0051603 proteolysis involved in cellular protein catabolic process Figure Label: GO:0051603 Species: Rattus norvegicus  Data Points: 28  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "proteolysis involved in cellular protein catabolic process", which is defined as "The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 486 Genes GS135934: high density lipoprotein (HDL) level 3 (Hdl3, Published QTL Chr 16) Figure Label: QTL-Hdl3-Mouse-Chr 16 Species: Mus musculus  Data Points: 486  Description: QTL associated with high density lipoprotein (HDL) level 3. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (29030158) Available to: Everyone (Tier II)
	Tier I Mouse CTD 10652 Genes GS256287: Tetrachlorodibenzodioxin interacting with Mus musculus associated genes (MeSH:D013749) in CTD Figure Label: Tetrachlorodibenzodioxin M.m. Species: Mus musculus  Data Points: 10652  Description: Genes associated with Mus musculus that interact with the MeSH term 'Tetrachlorodibenzodioxin' (D013749). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 194 Genes GS227307: MSigDB Geneset - GSE14350_TREG_VS_TEFF_DN Figure Label: GSE14350_TREG_VS_TEFF_DN Species: Mus musculus  Data Points: 194  Description: GSE14350_TREG_VS_TEFF_DN Genes down-regulated in comparison of regulatory T cell (Treg) versus effector T cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human CTD 1144 Genes GS251474: Pheniramine interacting with Homo sapiens associated genes (MeSH:D010632) in CTD Figure Label: Pheniramine H.s. Species: Homo sapiens  Data Points: 1144  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Pheniramine' (D010632). Incorporates data from 1168 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 196 Genes GS227572: MSigDB Geneset - GSE17721_0.5H_VS_4H_CPG_BMDM_UP Figure Label: GSE17721_0.5H_VS_4H_CPG_BMDM_UP Species: Mus musculus  Data Points: 196  Description: GSE17721_0.5H_VS_4H_CPG_BMDM_UP Genes up-regulated in comparison of dendritic cells (DC) stimulated with CpG DNA (TLR9 agonist) at 0.5 h versus those stimulated with CpG DNA (TLR9 agonist) at 4 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse CTD 437 Genes GS256103: 1-Methyl-4-phenylpyridinium interacting with Mus musculus associated genes (MeSH:D015655) in CTD Figure Label: 1-Methyl-4-phenylpyridinium M.m. Species: Mus musculus  Data Points: 437  Description: Genes associated with Mus musculus that interact with the MeSH term '1-Methyl-4-phenylpyridinium' (D015655). Incorporates data from 16 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 537 Genes GS252620: 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine interacting with Homo sapiens associated genes (MeSH:C532162) in CTD Figure Label: 2-(1H-indazol-4-yl)-6-(4-methanesulf... H.s. Species: Homo sapiens  Data Points: 537  Description: Genes associated with Homo sapiens that interact with the MeSH term '2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine' (C532162). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 9704 Genes GS244426: [MeSH] Tumor Cells, Cultured : D014407 Figure Label: Tumor Cells, Cultured Species: Homo sapiens  Data Points: 9704  Description: Cells grown in vitro from neoplastic tissue. If they can be established as a TUMOR CELL LINE, they can be propagated in cell culture indefinitely. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse GO 3295 Genes GS331534: GO:0005737 cytoplasm Figure Label: GO:0005737 Species: Mus musculus  Data Points: 3295  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cytoplasm", which is defined as "All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 228 Genes GS123337: Oxyquinoline interacting with Homo sapiens associated genes (MeSH:D015125) in CTD Figure Label: Oxyquinoline H.s. Species: Homo sapiens  Data Points: 228  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Oxyquinoline' (D015125). Incorporates data from 765 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse GO 6332 Genes GS332424: GO:0005623 cell Figure Label: GO:0005623 Species: Mus musculus  Data Points: 6332  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cell", which is defined as "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 258 Genes GS327286: GO:1901575 organic substance catabolic process Figure Label: GO:1901575 Species: Rattus norvegicus  Data Points: 258  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "organic substance catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of an organic substance, any molecular entity containing carbon." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 46 Genes GS320730: GO:0044265 cellular macromolecule catabolic process Figure Label: GO:0044265 Species: Rattus norvegicus  Data Points: 46  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular macromolecule catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of a macromolecule, any large molecule including proteins, nucleic acids and carbohydrates, as carried out by individual cells." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse CTD 1629 Genes GS259308: palm oil interacting with Mus musculus associated genes (MeSH:C041786) in CTD Figure Label: palm oil M.m. Species: Mus musculus  Data Points: 1629  Description: Genes associated with Mus musculus that interact with the MeSH term 'palm oil' (C041786). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 4077 Genes GS251284: Antirheumatic Agents interacting with Homo sapiens associated genes (MeSH:D018501) in CTD Figure Label: Antirheumatic Agents H.s. Species: Homo sapiens  Data Points: 4077  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Antirheumatic Agents' (D018501). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 5902 Genes GS124700: 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide interacting with Homo sapiens associated genes (MeSH:C459179) in CTD Figure Label: 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin... H.s. Species: Homo sapiens  Data Points: 5902  Description: Genes associated with Homo sapiens that interact with the MeSH term '4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide' (C459179). Incorporates data from 9 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse GO 4889 Genes GS332814: GO:0044424 intracellular part Figure Label: GO:0044424 Species: Mus musculus  Data Points: 4889  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular part", which is defined as "Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 476 Genes GS136684: skull morphology 23 (Skull23, Published QTL Chr 16) Figure Label: QTL-Skull23-Mouse-Chr 16 Species: Mus musculus  Data Points: 476  Description: QTL associated with skull morphology 23. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (22956575) Available to: Everyone (Tier II)
	Tier I Rat CTD 2074 Genes GS263485: Gentamicins interacting with Rattus norvegicus associated genes (MeSH:D005839) in CTD Figure Label: Gentamicins R.n. Species: Rattus norvegicus  Data Points: 2074  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Gentamicins' (D005839). Incorporates data from 1391 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Mouse 119 Genes GS213213: Collaborative Cross Cecum Microflora Parabiclique2 CC03.9t.8g.8g Figure Label: CC_Microflora_PB2_9t8g8g Species: Mus musculus  Data Points: 119  Description: Parabiclique of genes co-expressed with microflora CC03 (Clostridiales Ruminococcaceae Oscillibacter), C142, (Clostridiales Incertae Sedis XII Guggenheimella), C158 (Bacteroidales Rikenellaceae Rikenella), C2801 (Bacteroidales Rikenellaceae Rikenella), C311 (Bacteroidales Rikenellaceae Rikenella) Available to: Everyone (Tier V)
	Tier II Human 18339 Genes GS238575: [MeSH] Nucleic Acids : D009696 Figure Label: Nucleic Acids Species: Homo sapiens  Data Points: 18339  Description: High molecular weight polymers containing a mixture of purine and pyrimidine nucleotides chained together by ribose or deoxyribose linkages. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human CTD 246 Genes GS124150: sodium bichromate interacting with Homo sapiens associated genes (MeSH:C016104) in CTD Figure Label: sodium bichromate H.s. Species: Homo sapiens  Data Points: 246  Description: Genes associated with Homo sapiens that interact with the MeSH term 'sodium bichromate' (C016104). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 29 Genes GS320294: GO:0044257 cellular protein catabolic process Figure Label: GO:0044257 Species: Rattus norvegicus  Data Points: 29  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular protein catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of a protein by individual cells." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 3630 Genes GS322276: GO:0009987 cellular process Figure Label: GO:0009987 Species: Rattus norvegicus  Data Points: 3630  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular process", which is defined as "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 4077 Genes GS251285: Serotonin Agents interacting with nan associated genes (MeSH:D018490) in CTD Figure Label: Serotonin Agents n. Species: Homo sapiens  Data Points: 4077  Description: Genes associated with nan that interact with the MeSH term 'Serotonin Agents' (D018490). Incorporates data from 4198 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 198 Genes GS228813: MSigDB Geneset - GSE20715_0H_VS_48H_OZONE_TLR4_KO_LUNG_DN Figure Label: GSE20715_0H_VS_48H_OZONE_TLR4_KO_LUNG_DN Species: Mus musculus  Data Points: 198  Description: GSE20715_0H_VS_48H_OZONE_TLR4_KO_LUNG_DN Genes down-regulated in comparison of lung tissue from wild type mice subjected to ozone for 0 h versus that from TLR4 [GeneID=7099] deficient mice subjected to ozone for 48 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse 129 Genes GS227447: MSigDB Geneset - RB_P130_DN.V1_UP Figure Label: RB_P130_DN.V1_UP Species: Mus musculus  Data Points: 129  Description: RB_P130_DN.V1_UP Genes up-regulated in primary keratinocytes from RB1 and RBL2 [GeneID=5925] [GeneID=5934] skin specific knockout mice. c6 - Genesets containing oncogenic signatures defined directly from microarray gene expression data from cancer gene perturbations. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 3663 Genes GS234137: [MeSH] HEK293 Cells : D057809 Figure Label: HEK293 Cells Species: Homo sapiens  Data Points: 3663  Description: A cell line generated from human embryonic kidney cells that were tranformed with human adenovirus type 5. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 261 Genes GS229179: MSigDB Geneset - V$OSF2_Q6 Figure Label: V$OSF2_Q6 Species: Homo sapiens  Data Points: 261  Description: V$OSF2_Q6 Genes with promoter regions [-2kb,2kb] around transcription start site containing the motif ACCACANM which matches annotation for RUNX2: runt-related transcription factor 2 c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 17884 Genes GS239502: [MeSH] Nucleic Acid Probes : D015341 Figure Label: Nucleic Acid Probes Species: Homo sapiens  Data Points: 17884  Description: Nucleic acid which complements a specific mRNA or DNA molecule, or fragment thereof; used for hybridization studies in order to identify microorganisms and for genetic studies. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human CTD 462 Genes GS121565: afimoxifene interacting with Homo sapiens associated genes (MeSH:C016601) in CTD Figure Label: afimoxifene H.s. Species: Homo sapiens  Data Points: 462  Description: Genes associated with Homo sapiens that interact with the MeSH term 'afimoxifene' (C016601). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 7249 Genes GS123768: Cyclosporine interacting with Homo sapiens associated genes (MeSH:D016572) in CTD Figure Label: Cyclosporine H.s. Species: Homo sapiens  Data Points: 7249  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Cyclosporine' (D016572). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 8777 Genes GS244835: [MeSH] Chromosomes : D002875 Figure Label: Chromosomes Species: Homo sapiens  Data Points: 8777  Description: In a prokaryotic cell or in the nucleus of a eukaryotic cell, a structure consisting of or containing DNA which carries the genetic information essential to the cell. (From Singleton & Sainsbury, Dictionary of Microbiology and Molecular Biology, 2d ed) Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human CTD 958 Genes GS125581: Botulinum Toxins, Type A interacting with Homo sapiens associated genes (MeSH:D019274) in CTD Figure Label: Botulinum Toxins, Type A H.s. Species: Homo sapiens  Data Points: 958  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Botulinum Toxins, Type A' (D019274). Incorporates data from 971 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 25 Genes GS322472: GO:0051117 ATPase binding Figure Label: GO:0051117 Species: Rattus norvegicus  Data Points: 25  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "ATPase binding", which is defined as "Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 188 Genes GS229411: MSigDB Geneset - GSE29617_CTRL_VS_DAY7_TIV_FLU_VACCINE_PBMC_2008_DN Figure Label: GSE29617_CTRL_VS_DAY7_TIV_FLU_VACCINE_PBMC_2008_DN Species: Homo sapiens  Data Points: 188  Description: GSE29617_CTRL_VS_DAY7_TIV_FLU_VACCINE_PBMC_2008_DN Genes down-regulated in comparison of peripheral blood mononuclear cells (PBMC) from TIV influenza vaccinee pre-vaccination versus those at day 7 post-vaccination. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 23 Genes GS318320: GO:0051087 chaperone binding Figure Label: GO:0051087 Species: Rattus norvegicus  Data Points: 23  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "chaperone binding", which is defined as "Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 15271 Genes GS242059: [MeSH] Cells : D002477 Figure Label: Cells Species: Homo sapiens  Data Points: 15271  Description: The fundamental, structural, and functional units or subunits of living organisms. They are composed of CYTOPLASM containing various ORGANELLES and a CELL MEMBRANE boundary. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 248 Genes GS232324: PC Geneset - "V$AML_Q6" pathway genes Figure Label: V$AML_Q6 Species: Homo sapiens  Data Points: 248  Description: Pathway Commons (PC) Geneset. This geneset contains genes that participate in the "V$AML_Q6" pathway. This set was automatically constructed using the PC API. The original source of this geneset is TRANSFAC. gene2pc v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human 189 Genes GS228888: MSigDB Geneset - GSE13411_PLASMA_CELL_VS_MEMORY_BCELL_UP Figure Label: GSE13411_PLASMA_CELL_VS_MEMORY_BCELL_UP Species: Homo sapiens  Data Points: 189  Description: GSE13411_PLASMA_CELL_VS_MEMORY_BCELL_UP Genes up-regulated in comparison of plasma cells versus memory B cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 18365 Genes GS244482: [MeSH] Nucleic Acids, Nucleotides, and Nucleosides : D009706 Figure Label: Nucleic Acids, Nucleotides, and Nucleosides Species: Homo sapiens  Data Points: 18365  Description: Complex compounds of high molecular weight occurring in living cells. These are basically of two types, ribonucleic (RNA) and deoxyribonucleic (DNA) acids, both of which consist of nucleotides (nucleoside phosphates linked together by phosphate bridges). Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human CTD 1571 Genes GS124037: Oxygen interacting with Homo sapiens associated genes (MeSH:D010100) in CTD Figure Label: Oxygen H.s. Species: Homo sapiens  Data Points: 1571  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Oxygen' (D010100). Incorporates data from 8 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 465 Genes GS252852: (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II) interacting with Homo sapiens associated genes (MeSH:C517041) in CTD Figure Label: (4-amino-1,4-dihydro-3-(2-pyridyl)-5... H.s. Species: Homo sapiens  Data Points: 465  Description: Genes associated with Homo sapiens that interact with the MeSH term '(4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II)' (C517041). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse GO 9 Genes GS339089: GO:0034663 endoplasmic reticulum chaperone complex Figure Label: GO:0034663 Species: Mus musculus  Data Points: 9  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "endoplasmic reticulum chaperone complex", which is defined as "A protein complex that is located in the endoplasmic reticulum and is composed of chaperone proteins, including BiP, GRP94; CaBP1, protein disulfide isomerase (PDI), ERdj3, cyclophilin B, ERp72, GRP170, UDP-glucosyltransferase, and SDF2-L1." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 4634 Genes GS316977: GO:0008150 biological_process Figure Label: GO:0008150 Species: Rattus norvegicus  Data Points: 4634  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "biological_process", which is defined as "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 958 Genes GS122552: Thapsigargin interacting with Cricetulus griseus associated genes (MeSH:D019284) in CTD Figure Label: Thapsigargin C.g. Species: Homo sapiens  Data Points: 958  Description: Genes associated with Cricetulus griseus that interact with the MeSH term 'Thapsigargin' (D019284). Incorporates data from 376 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 17873 Genes GS235797: [MeSH] DNA Probes : D015342 Figure Label: DNA Probes Species: Homo sapiens  Data Points: 17873  Description: Species- or subspecies-specific DNA (including COMPLEMENTARY DNA; conserved genes, whole chromosomes, or whole genomes) used in hybridization studies in order to identify microorganisms, to measure DNA-DNA homologies, to group subspecies, etc. The DNA probe hybridizes with a specific mRNA, if present. Conventional techniques used for testing for the hybridization product include dot blot assays, Southern blot assays, and DNA:RNA hybrid-specific antibody tests. Conventional labels for the DNA probe include the radioisotope labels 32P and 125I and the chemical label biotin. The use of DNA probes provides a specific, sensitive, rapid, and inexpensive replacement for cell culture techniques for diagnosing infections. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human CTD 553 Genes GS121939: Dieldrin interacting with Micropterus salmoides associated genes (MeSH:D004026) in CTD Figure Label: Dieldrin M.s. Species: Homo sapiens  Data Points: 553  Description: Genes associated with Micropterus salmoides that interact with the MeSH term 'Dieldrin' (D004026). Incorporates data from 5 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 335 Genes GS136334: nicotine induced locomotor activity 10 (Nilac10, Published QTL Chr 16) Figure Label: QTL-Nilac10-Mouse-Chr 16 Species: Mus musculus  Data Points: 335  Description: QTL associated with nicotine induced locomotor activity 10. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (7319135) Available to: Everyone (Tier II)
	Tier II Human 16448 Genes GS235242: [MeSH] Biochemical Processes : D055438 Figure Label: Biochemical Processes Species: Homo sapiens  Data Points: 16448  Description: Chemical reactions or functions, enzymatic activities, and metabolic pathways of living things. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 13809 Genes GS234192: [MeSH] Gene Expression Regulation : D005786 Figure Label: Gene Expression Regulation Species: Homo sapiens  Data Points: 13809  Description: Any of the processes by which nuclear, cytoplasmic, or intercellular factors influence the differential control (induction or repression) of gene action at the level of transcription or translation. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 16145 Genes GS245685: [MeSH] RNA : D012313 Figure Label: RNA Species: Homo sapiens  Data Points: 16145  Description: A polynucleotide consisting essentially of chains with a repeating backbone of phosphate and ribose units to which nitrogenous bases are attached. RNA is unique among biological macromolecules in that it can encode genetic information, serve as an abundant structural component of cells, and also possesses catalytic activity. (Rieger et al., Glossary of Genetics: Classical and Molecular, 5th ed) Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 383 Genes GS323043: GO:0033554 cellular response to stress Figure Label: GO:0033554 Species: Rattus norvegicus  Data Points: 383  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular response to stress", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 749 Genes GS319804: GO:0010243 response to organonitrogen compound Figure Label: GO:0010243 Species: Rattus norvegicus  Data Points: 749  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to organonitrogen compound", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 10572 Genes GS125506: Valproic Acid interacting with Homo sapiens associated genes (MeSH:D014635) in CTD Figure Label: Valproic Acid H.s. Species: Homo sapiens  Data Points: 10572  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Valproic Acid' (D014635). Incorporates data from 1238 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 124 Genes GS319617: GO:1901565 organonitrogen compound catabolic process Figure Label: GO:1901565 Species: Rattus norvegicus  Data Points: 124  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "organonitrogen compound catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of organonitrogen compound." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I CTD 72 Genes GS260882: acifluorfen interacting with Gallus gallus associated genes (MeSH:C018425) in CTD Figure Label: acifluorfen G.g. Species: Gallus gallus  Data Points: 72  Description: Genes associated with Gallus gallus that interact with the MeSH term 'acifluorfen' (C018425). Incorporates data from 78 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 191 Genes GS230635: MSigDB Geneset - GSE9037_WT_VS_IRAK4_KO_BMDM_DN Figure Label: GSE9037_WT_VS_IRAK4_KO_BMDM_DN Species: Mus musculus  Data Points: 191  Description: GSE9037_WT_VS_IRAK4_KO_BMDM_DN Genes down-regulated in comparison of untreated wild type macrophages at 4 h versus those from IRAK4 [GeneID=51135] deficient mice at 4 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat DRG 3865 Genes provisional GS86945: Table S4: CORTEX MGC MICROARRAY [DRG] Figure Label: Chronic cocaine - Cocaine-paired (conditioned place preference) vs. Control (saline or cocaine-non-paired) Species: Rattus norvegicus  Data Points: 3865  Description: Chronic cocaine - Cocaine-paired (conditioned place preference) vs. Control (saline or cocaine-non-paired) DNA microarray All genes on microarray presented After the pre-conditioning phase where animals were allowed access to either compartment for 15 minutes for 4 consecutive days, the conditioning phase for the cocaine-paired groups and cocaine non-paired groups began, consisting of eight subsequent daily sessions. For both groups, cocaine (10 mg / kg) or saline injections were administered on alternate days. For the cocaine-paired groups, rats were immediately placed in one of the two compartments for 30 min with the door in place restricting a z transformation followed by z test and anova followed by Student-Newman-Keuls' post hoc test. Gene expression profile was assessed 24 h after the last conditioning session that corresponded to 48 h after last cocaine exposure, when drug has been eliminated from the body and transient transcriptional changes are likely to be minimal. Therefore, changes in gene expression at this time-point are likely to reflect longer lasting adaptations that may account for maintenance of cocaine-induced memories. The complete lists of the normalized gene expression values for the frontal cortex of saline-treated, cocaine non-paired and cocaine-paired groups are presented. Differences in the expression of 39 transcripts in the frontal cortex were related to the conditioned place preference paradigm. These include increases in the level of 22 genes and decreases in 17 genes. (NIF Table ID 130.4 [84.5]) Available to: Everyone (Tier I)
	Tier I Zebrafish CTD 472 Genes GS261660: Mercuric Chloride interacting with Danio rerio associated genes (MeSH:D008627) in CTD Figure Label: Mercuric Chloride D.r. Species: Danio rerio  Data Points: 472  Description: Genes associated with Danio rerio that interact with the MeSH term 'Mercuric Chloride' (D008627). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 10 Genes GS327793: GO:0010498 proteasomal protein catabolic process Figure Label: GO:0010498 Species: Rattus norvegicus  Data Points: 10  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "proteasomal protein catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse CTD 1258 Genes GS256074: Cyclosporine interacting with Mus musculus associated genes (MeSH:D016572) in CTD Figure Label: Cyclosporine M.m. Species: Mus musculus  Data Points: 1258  Description: Genes associated with Mus musculus that interact with the MeSH term 'Cyclosporine' (D016572). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 1924 Genes GS323692: GO:0043231 intracellular membrane-bounded organelle Figure Label: GO:0043231 Species: Rattus norvegicus  Data Points: 1924  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular membrane-bounded organelle", which is defined as "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 1144 Genes GS125445: Phenobarbital interacting with Homo sapiens associated genes (MeSH:D010634) in CTD Figure Label: Phenobarbital H.s. Species: Homo sapiens  Data Points: 1144  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Phenobarbital' (D010634). Incorporates data from 15 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse GO 2281 Genes GS334919: GO:0044444 cytoplasmic part Figure Label: GO:0044444 Species: Mus musculus  Data Points: 2281  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cytoplasmic part", which is defined as "Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat DRG 3865 Genes provisional GS86769: Table S2: HIPPOCAMPUS MGC MICROARRAY [DRG] Figure Label: Chronic cocaine - Cocaine-paired (conditioned place preference) vs. Control (saline or cocaine-non-paired) Species: Rattus norvegicus  Data Points: 3865  Description: Chronic cocaine - Cocaine-paired (conditioned place preference) vs. Control (saline or cocaine-non-paired) DNA microarray All genes on microarray presented After the pre-conditioning phase where animals were allowed access to either compartment for 15 minutes for 4 consecutive days, the conditioning phase for the cocaine-paired groups and cocaine non-paired groups began, consisting of eight subsequent daily sessions. For both groups, cocaine (10 mg / kg) or saline injections were administered on alternate days. For the cocaine-paired groups, rats were immediately placed in one of the two compartments for 30 min with the door in place restricting a z transformation followed by z test and anova followed by Student-Newman-Keuls' post hoc test. Gene expression profile was assessed 24 h after the last conditioning session that corresponded to 48 h after last cocaine exposure, when drug has been eliminated from the body and transient transcriptional changes are likely to be minimal. Therefore, changes in gene expression at this time-point are likely to reflect longer lasting adaptations that may account for maintenance of cocaine-induced memories. The complete lists of the normalized gene expression values for the hippocampus of saline-treated, cocaine non-paired and cocaine-paired groups are presented. Analyses revealed that 214 transcripts were differentially regulated in the hippocampus of cocaine-paired rats vs. non-paired and saline-treated controls. Cocaine-induced conditioned place preference caused significant increases in the expression of 151 genes and caused decreases in the expression of 63 genes. (NIF Table ID 130.2 [84]) Available to: Everyone (Tier I)
	Tier II Human 9375 Genes GS237817: [MeSH] Cell Line, Tumor : D045744 Figure Label: Cell Line, Tumor Species: Homo sapiens  Data Points: 9375  Description: A cell line derived from cultured tumor cells. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse 192 Genes GS229371: MSigDB Geneset - GSE39820_TGFBETA3_IL6_VS_TGFBETA3_IL6_IL23A_TREATED_CD4_TCELL_DN Figure Label: GSE39820_TGFBETA3_IL6_VS_TGFBETA3_IL6_IL23A_TREATED_CD4_TCELL_DN Species: Mus musculus  Data Points: 192  Description: GSE39820_TGFBETA3_IL6_VS_TGFBETA3_IL6_IL23A_TREATED_CD4_TCELL_DN Genes down-regulated in comparison of CD4 [GeneID=920] T cells treated with TGFB3 [GeneID=7043] and IL6 [GeneID=3569] versus those treated with TGF3B [GeneID=7043], IL6 [GeneID=3569] and IL23A [GeneID=51561]. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse 193 Genes GS230662: MSigDB Geneset - GSE17721_0.5H_VS_24H_CPG_BMDM_UP Figure Label: GSE17721_0.5H_VS_24H_CPG_BMDM_UP Species: Mus musculus  Data Points: 193  Description: GSE17721_0.5H_VS_24H_CPG_BMDM_UP Genes up-regulated in comparison of dendritic cells (DC) stimulated with CpG DNA (TLR9 agonist) at 0.5 h versus those stimulated with CpG DNA (TLR9 agonist) at 24 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse CTD 788 Genes GS257120: Ciguatoxins interacting with Mus musculus associated genes (MeSH:D002922) in CTD Figure Label: Ciguatoxins M.m. Species: Mus musculus  Data Points: 788  Description: Genes associated with Mus musculus that interact with the MeSH term 'Ciguatoxins' (D002922). Incorporates data from 13 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 13275 Genes GS238592: [MeSH] Cells, Cultured : D002478 Figure Label: Cells, Cultured Species: Homo sapiens  Data Points: 13275  Description: Cells propagated in vitro in special media conducive to their growth. Cultured cells are used to study developmental, morphologic, metabolic, physiologic, and genetic processes, among others. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 122 Genes GS228926: MSigDB Geneset - V$NKX25_01 Figure Label: V$NKX25_01 Species: Homo sapiens  Data Points: 122  Description: V$NKX25_01 Genes with promoter regions [-2kb,2kb] around transcription start site containing the motif TYAAGTG which matches annotation for NKX2-5: NK2 transcription factor related, locus 5 (Drosophila) c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 774 Genes GS324582: GO:1901698 response to nitrogen compound Figure Label: GO:1901698 Species: Rattus norvegicus  Data Points: 774  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to nitrogen compound", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat CTD 1064 Genes GS266999: nimesulide interacting with Rattus norvegicus associated genes (MeSH:C012655) in CTD Figure Label: nimesulide R.n. Species: Rattus norvegicus  Data Points: 1064  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'nimesulide' (C012655). Incorporates data from 7 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 10652 Genes GS256288: Tetracaine interacting with Mus musculus associated genes (MeSH:D013748) in CTD Figure Label: Tetracaine M.m. Species: Mus musculus  Data Points: 10652  Description: Genes associated with Mus musculus that interact with the MeSH term 'Tetracaine' (D013748). Incorporates data from 12365 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse 191 Genes GS227326: MSigDB Geneset - GSE17721_CTRL_VS_CPG_0.5H_BMDM_DN Figure Label: GSE17721_CTRL_VS_CPG_0.5H_BMDM_DN Species: Mus musculus  Data Points: 191  Description: GSE17721_CTRL_VS_CPG_0.5H_BMDM_DN Genes down-regulated in comparison of control dendritic cells (DC) at 0 h versus those stimulated with CpG DNA (TLR9 agonist) at 0.5 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 1711 Genes GS323036: GO:0044238 primary metabolic process Figure Label: GO:0044238 Species: Rattus norvegicus  Data Points: 1711  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "primary metabolic process", which is defined as "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 1737 Genes GS123811: Zinc interacting with Homo sapiens associated genes (MeSH:D015032) in CTD Figure Label: Zinc H.s. Species: Homo sapiens  Data Points: 1737  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Zinc' (D015032). Incorporates data from 59 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 483 Genes GS84292: nicotine sensitivity (Published QTL, Chr 16) Figure Label: QTL for nicotine sensitivity on Chr16 at D16Mit131 (8.72 Mbp , Build 37) Species: Mus musculus  Data Points: 483  Description: nicotine sensitivity spans 0.00 - 33.72 Mbp (NCBI Build 37) on Chr16. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org). Available to: Everyone (Tier II)
	Tier II Human 9890 Genes GS235538: [MeSH] Protein Binding : D011485 Figure Label: Protein Binding Species: Homo sapiens  Data Points: 9890  Description: The process in which substances, either endogenous or exogenous, bind to proteins, peptides, enzymes, protein precursors, or allied compounds. Specific protein-binding measures are often used as assays in diagnostic assessments. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 6014 Genes GS245560: [MeSH] Ubiquitin : D025801 Figure Label: Ubiquitin Species: Homo sapiens  Data Points: 6014  Description: A highly conserved 76-amino acid peptide universally found in eukaryotic cells that functions as a marker for intracellular PROTEIN TRANSPORT and degradation. Ubiquitin becomes activated through a series of complicated steps and forms an isopeptide bond to lysine residues of specific proteins within the cell. These "ubiquitinated" proteins can be recognized and degraded by proteosomes or be transported to specific compartments within the cell. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 3237 Genes GS327120: GO:0005488 binding Figure Label: GO:0005488 Species: Rattus norvegicus  Data Points: 3237  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "binding", which is defined as "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 396 Genes GS135719: determination of interleukin 4 commitment 1 (Dice1, Published QTL Chr 16) Figure Label: QTL-Dice1-Mouse-Chr 16 Species: Mus musculus  Data Points: 396  Description: QTL associated with determination of interleukin 4 commitment 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (11616475) Available to: Everyone (Tier II)
	Tier I CTD 72 Genes GS260881: oleoresins interacting with Gallus gallus associated genes (MeSH:C018620) in CTD Figure Label: oleoresins G.g. Species: Gallus gallus  Data Points: 72  Description: Genes associated with Gallus gallus that interact with the MeSH term 'oleoresins' (C018620). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 1817 Genes GS255835: Soot interacting with Mus musculus associated genes (MeSH:D053260) in CTD Figure Label: Soot M.m. Species: Mus musculus  Data Points: 1817  Description: Genes associated with Mus musculus that interact with the MeSH term 'Soot' (D053260). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human 265 Genes GS228035: MSigDB Geneset - V$COREBINDINGFACTOR_Q6 Figure Label: V$COREBINDINGFACTOR_Q6 Species: Homo sapiens  Data Points: 265  Description: V$COREBINDINGFACTOR_Q6 Genes with promoter regions [-2kb,2kb] around transcription start site containing the motif TGTGGTTW which matches annotation for CBFA2T2: core-binding factor, runt domain, alpha subunit 2; translocated to, 2 CBFA2T3: core-binding factor, runt domain, alpha subunit 2; translocated to, 3 c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Mouse 339 Genes GS135974: wound healing/regeneration 11 (Heal11, Published QTL Chr 16) Figure Label: QTL-Heal11-Mouse-Chr 16 Species: Mus musculus  Data Points: 339  Description: QTL associated with wound healing/regeneration 11. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (7445973) Available to: Everyone (Tier II)
	Tier I Mouse CTD 4083 Genes GS257019: Dietary Fats interacting with Mus musculus associated genes (MeSH:D004041) in CTD Figure Label: Dietary Fats M.m. Species: Mus musculus  Data Points: 4083  Description: Genes associated with Mus musculus that interact with the MeSH term 'Dietary Fats' (D004041). Incorporates data from 83 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat CTD 2821 Genes GS263731: Crotalid Venoms interacting with Rattus norvegicus associated genes (MeSH:D003435) in CTD Figure Label: Crotalid Venoms R.n. Species: Rattus norvegicus  Data Points: 2821  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Crotalid Venoms' (D003435). Incorporates data from 3400 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 476 Genes GS135444: bone length and organs 10 (Bod10, Published QTL Chr 16) Figure Label: QTL-Bod10-Mouse-Chr 16 Species: Mus musculus  Data Points: 476  Description: QTL associated with bone length and organs 10. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (22956575) Available to: Everyone (Tier II)
	Tier I Human CTD 3279 Genes GS126895: Formaldehyde interacting with Homo sapiens associated genes (MeSH:D005557) in CTD Figure Label: Formaldehyde H.s. Species: Homo sapiens  Data Points: 3279  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Formaldehyde' (D005557). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 17895 Genes GS243866: [MeSH] Laboratory Chemicals : D019995 Figure Label: Laboratory Chemicals Species: Homo sapiens  Data Points: 17895  Description: Chemicals necessary to perform experimental and/or investigative procedures and for the preparation of drugs and other chemicals. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse CTD 1254 Genes GS256728: Lipopolysaccharides interacting with Mus musculus associated genes (MeSH:D008070) in CTD Figure Label: Lipopolysaccharides M.m. Species: Mus musculus  Data Points: 1254  Description: Genes associated with Mus musculus that interact with the MeSH term 'Lipopolysaccharides' (D008070). Incorporates data from 8 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 1905 Genes GS324369: GO:0071704 organic substance metabolic process Figure Label: GO:0071704 Species: Rattus norvegicus  Data Points: 1905  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "organic substance metabolic process", which is defined as "The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 11971 Genes GS232685: PC Geneset - "Homo sapiens" pathway genes Figure Label: Homo sapiens Species: Homo sapiens  Data Points: 11971  Description: Pathway Commons (PC) Geneset. This geneset contains genes that participate in the "Homo sapiens" pathway. This set was automatically constructed using the PC API. The original source of this geneset is miRTarBase. gene2pc v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 2700 Genes GS316969: GO:0065007 biological regulation Figure Label: GO:0065007 Species: Rattus norvegicus  Data Points: 2700  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "biological regulation", which is defined as "Any process that modulates a measurable attribute of any biological process, quality or function." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 315 Genes GS136792: TallyHo associated non-insulin dependent diabetes mellitus 3 (Tanidd3, Published QTL Chr 16) Figure Label: QTL-Tanidd3-Mouse-Chr 16 Species: Mus musculus  Data Points: 315  Description: QTL associated with TallyHo associated non-insulin dependent diabetes mellitus 3. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (6079819) Available to: Everyone (Tier II)
	Tier II Mouse 477 Genes GS135993: hemoglobin QTL 1 (Hgbq1, Published QTL Chr 16) Figure Label: QTL-Hgbq1-Mouse-Chr 16 Species: Mus musculus  Data Points: 477  Description: QTL associated with hemoglobin QTL 1. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (32704177) Available to: Everyone (Tier II)
	Tier I Mouse CTD 583 Genes GS256569: Ozone interacting with Mus musculus associated genes (MeSH:D010126) in CTD Figure Label: Ozone M.m. Species: Mus musculus  Data Points: 583  Description: Genes associated with Mus musculus that interact with the MeSH term 'Ozone' (D010126). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 3059 Genes GS124695: arsenic trioxide interacting with Homo sapiens associated genes (MeSH:C006632) in CTD Figure Label: arsenic trioxide H.s. Species: Homo sapiens  Data Points: 3059  Description: Genes associated with Homo sapiens that interact with the MeSH term 'arsenic trioxide' (C006632). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 288 Genes GS126287: Estrogens interacting with Homo sapiens associated genes (MeSH:D004967) in CTD Figure Label: Estrogens H.s. Species: Homo sapiens  Data Points: 288  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Estrogens' (D004967). Incorporates data from 102 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat CTD 2307 Genes GS266190: furan interacting with Rattus norvegicus associated genes (MeSH:C039281) in CTD Figure Label: furan R.n. Species: Rattus norvegicus  Data Points: 2307  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'furan' (C039281). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 476 Genes GS136669: skin tumor susceptibility 9 (Skts9, Published QTL Chr 16) Figure Label: QTL-Skts9-Mouse-Chr 16 Species: Mus musculus  Data Points: 476  Description: QTL associated with skin tumor susceptibility 9. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (22956575) Available to: Everyone (Tier II)
	Tier II Human 17896 Genes GS243233: [MeSH] Specialty Uses of Chemicals : D020313 Figure Label: Specialty Uses of Chemicals Species: Homo sapiens  Data Points: 17896  Description: Uses of chemicals in a research, industrial, or household setting. This does not include PHARMACOLOGIC ACTIONS. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 1 Genes GS318783: GO:0051788 response to misfolded protein Figure Label: GO:0051788 Species: Rattus norvegicus  Data Points: 1  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to misfolded protein", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 1 Genes GS323979: GO:0071218 cellular response to misfolded protein Figure Label: GO:0071218 Species: Rattus norvegicus  Data Points: 1  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular response to misfolded protein", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human 191 Genes GS230012: MSigDB Geneset - GSE17974_0H_VS_12H_IN_VITRO_ACT_CD4_TCELL_DN Figure Label: GSE17974_0H_VS_12H_IN_VITRO_ACT_CD4_TCELL_DN Species: Homo sapiens  Data Points: 191  Description: GSE17974_0H_VS_12H_IN_VITRO_ACT_CD4_TCELL_DN Genes down-regulated in comparison of untreated CD4 [GeneID=920] T cells at 0 h versus the untreated cells at 12 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse CTD 283 Genes GS259542: naphthalene interacting with Mus musculus associated genes (MeSH:C031721) in CTD Figure Label: naphthalene M.m. Species: Mus musculus  Data Points: 283  Description: Genes associated with Mus musculus that interact with the MeSH term 'naphthalene' (C031721). Incorporates data from 36 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 444 Genes GS323884: GO:0043067 regulation of programmed cell death Figure Label: GO:0043067 Species: Rattus norvegicus  Data Points: 444  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "regulation of programmed cell death", which is defined as "Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 306 Genes GS320795: GO:0009056 catabolic process Figure Label: GO:0009056 Species: Rattus norvegicus  Data Points: 306  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat GO 2438 Genes GS324808: GO:0050789 regulation of biological process Figure Label: GO:0050789 Species: Rattus norvegicus  Data Points: 2438  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "regulation of biological process", which is defined as "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Mouse 477 Genes GS136545: periosteal circumference 4 (Pstc4, Published QTL Chr 16) Figure Label: QTL-Pstc4-Mouse-Chr 16 Species: Mus musculus  Data Points: 477  Description: QTL associated with periosteal circumference 4. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (32704177) Available to: Everyone (Tier II)
	Tier I Human CTD 2300 Genes GS125319: Ethyl Methanesulfonate interacting with Homo sapiens associated genes (MeSH:D005020) in CTD Figure Label: Ethyl Methanesulfonate H.s. Species: Homo sapiens  Data Points: 2300  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Ethyl Methanesulfonate' (D005020). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 486 Genes GS136185: lymphoproliferation modifier 5 (Lprm5, Published QTL Chr 16) Figure Label: QTL-Lprm5-Mouse-Chr 16 Species: Mus musculus  Data Points: 486  Description: QTL associated with lymphoproliferation modifier 5. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (29030158) Available to: Everyone (Tier II)
	Tier I Mouse CTD 1218 Genes GS258984: 7,12-dimethylbenz(a)anthracene-DNA adduct interacting with Mus musculus associated genes (MeSH:C059444) in CTD Figure Label: 7,12-dimethylbenz(a)anthracene-DNA a... M.m. Species: Mus musculus  Data Points: 1218  Description: Genes associated with Mus musculus that interact with the MeSH term '7,12-dimethylbenz(a)anthracene-DNA adduct' (C059444). Incorporates data from 1342 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human 180 Genes GS230540: MSigDB Geneset - GSE14000_TRANSLATED_RNA_VS_MRNA_16H_LPS_DC_DN Figure Label: GSE14000_TRANSLATED_RNA_VS_MRNA_16H_LPS_DC_DN Species: Homo sapiens  Data Points: 180  Description: GSE14000_TRANSLATED_RNA_VS_MRNA_16H_LPS_DC_DN Genes down-regulated in comparison of polysome bound (translated) mRNA versus total mRNA 16 h after LPS (TLR4 agonist) stimulation. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 10244 Genes GS244735: [MeSH] Mutagenesis : D016296 Figure Label: Mutagenesis Species: Homo sapiens  Data Points: 10244  Description: Process of generating a genetic MUTATION. It may occur spontaneously or be induced by MUTAGENS. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 1102 Genes GS319616: GO:1901564 organonitrogen compound metabolic process Figure Label: GO:1901564 Species: Rattus norvegicus  Data Points: 1102  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "organonitrogen compound metabolic process", which is defined as "The chemical reactions and pathways involving organonitrogen compound." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse CTD 2095 Genes GS256303: Tamoxifen interacting with Mus musculus associated genes (MeSH:D013629) in CTD Figure Label: Tamoxifen M.m. Species: Mus musculus  Data Points: 2095  Description: Genes associated with Mus musculus that interact with the MeSH term 'Tamoxifen' (D013629). Incorporates data from 21 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 480 Genes GS135263: acute functional tolerance to ethanol QTL 2 (Afteq2, Published QTL Chr 16) Figure Label: QTL-Afteq2-Mouse-Chr 16 Species: Mus musculus  Data Points: 480  Description: QTL associated with acute functional tolerance to ethanol QTL 2. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (23737062) Available to: Everyone (Tier II)
	Tier I Human 177 Genes GS229744: MSigDB Geneset - GSE14000_TRANSLATED_RNA_VS_MRNA_DC_DN Figure Label: GSE14000_TRANSLATED_RNA_VS_MRNA_DC_DN Species: Homo sapiens  Data Points: 177  Description: GSE14000_TRANSLATED_RNA_VS_MRNA_DC_DN Genes down-regulated in comparison of polysome bound (translated) mRNA versus total mRNA in dendritic cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human 185 Genes GS228791: MSigDB Geneset - GSE14000_4H_VS_16H_LPS_DC_TRANSLATED_RNA_UP Figure Label: GSE14000_4H_VS_16H_LPS_DC_TRANSLATED_RNA_UP Species: Homo sapiens  Data Points: 185  Description: GSE14000_4H_VS_16H_LPS_DC_TRANSLATED_RNA_UP Genes up-regulated in comparison of polysome bound (translated) mRNA in dendritic cells (DC) at 4 h after LPS (TLR4 agonist) stimulation versus those at 16 h after the stimulation. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 850 Genes GS327855: GO:0071310 cellular response to organic substance Figure Label: GO:0071310 Species: Rattus norvegicus  Data Points: 850  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular response to organic substance", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse 189 Genes GS227349: MSigDB Geneset - GSE30962_PRIMARY_VS_SECONDARY_ACUTE_LCMV_INF_CD8_TCELL_UP Figure Label: GSE30962_PRIMARY_VS_SECONDARY_ACUTE_LCMV_INF_CD8_TCELL_UP Species: Mus musculus  Data Points: 189  Description: GSE30962_PRIMARY_VS_SECONDARY_ACUTE_LCMV_INF_CD8_TCELL_UP Genes up-regulated in comparison of splenic primary CD8 effector T cells at day 8 post-acute infection versus splenic secondary CD8 effector T cells at day 8 post-acute infection. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human 257 Genes GS231827: PC Geneset - "V$OSF2_Q6" pathway genes Figure Label: V$OSF2_Q6 Species: Homo sapiens  Data Points: 257  Description: Pathway Commons (PC) Geneset. This geneset contains genes that participate in the "V$OSF2_Q6" pathway. This set was automatically constructed using the PC API. The original source of this geneset is TRANSFAC. gene2pc v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 2462 Genes GS319194: GO:0043229 intracellular organelle Figure Label: GO:0043229 Species: Rattus norvegicus  Data Points: 2462  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "intracellular organelle", which is defined as "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse 194 Genes GS228424: MSigDB Geneset - GSE27786_CD4_TCELL_VS_NKCELL_DN Figure Label: GSE27786_CD4_TCELL_VS_NKCELL_DN Species: Mus musculus  Data Points: 194  Description: GSE27786_CD4_TCELL_VS_NKCELL_DN Genes down-regulated in comparison of CD4 [GeneID=920] T cells versus NK cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier II Human 18573 Genes GS238415: [MeSH] Genome Components : D040481 Figure Label: Genome Components Species: Homo sapiens  Data Points: 18573  Description: The parts of a GENOME sequence that are involved with the different functions or properties of genomes as a whole as opposed to those of individual GENES. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat CTD 166 Genes GS264119: 1-(2-trifluoromethoxyphenyl)-2-nitroethanone interacting with Rattus norvegicus associated genes (MeSH:C576882) in CTD Figure Label: 1-(2-trifluoromethoxyphenyl)-2-nitro... R.n. Species: Rattus norvegicus  Data Points: 166  Description: Genes associated with Rattus norvegicus that interact with the MeSH term '1-(2-trifluoromethoxyphenyl)-2-nitroethanone' (C576882). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human 192 Genes GS228373: MSigDB Geneset - GSE3982_MAST_CELL_VS_EFF_MEMORY_CD4_TCELL_UP Figure Label: GSE3982_MAST_CELL_VS_EFF_MEMORY_CD4_TCELL_UP Species: Homo sapiens  Data Points: 192  Description: GSE3982_MAST_CELL_VS_EFF_MEMORY_CD4_TCELL_UP Genes up-regulated in comparison of mast cells versus effector memory CD4 [GeneID=920] T cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human CTD 758 Genes GS251594: Hydantoins interacting with Homo sapiens associated genes (MeSH:D006827) in CTD Figure Label: Hydantoins H.s. Species: Homo sapiens  Data Points: 758  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Hydantoins' (D006827). Incorporates data from 771 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse GO 7187 Genes GS334959: GO:0005575 cellular_component Figure Label: GO:0005575 Species: Mus musculus  Data Points: 7187  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cellular_component", which is defined as "The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 17884 Genes GS240750: [MeSH] Molecular Probes : D015335 Figure Label: Molecular Probes Species: Homo sapiens  Data Points: 17884  Description: A group of atoms or molecules attached to other molecules or cellular structures and used in studying the properties of these molecules and structures. Radioactive DNA or RNA sequences are used in MOLECULAR GENETICS to detect the presence of a complementary sequence by NUCLEIC ACID HYBRIDIZATION. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse GO 6323 Genes GS337136: GO:0044464 cell part Figure Label: GO:0044464 Species: Mus musculus  Data Points: 6323  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "cell part", which is defined as "Any constituent part of a cell, the basic structural and functional unit of all organisms." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse GO 142 Genes GS338149: GO:0044432 endoplasmic reticulum part Figure Label: GO:0044432 Species: Mus musculus  Data Points: 142  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "endoplasmic reticulum part", which is defined as "Any constituent part of the endoplasmic reticulum, the irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Human CTD 1211 Genes GS125936: Tunicamycin interacting with Homo sapiens associated genes (MeSH:D014415) in CTD Figure Label: Tunicamycin H.s. Species: Homo sapiens  Data Points: 1211  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Tunicamycin' (D014415). Incorporates data from 14 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human 912 Genes GS230176: MSigDB Geneset - TTANTCA_UNKNOWN Figure Label: TTANTCA_UNKNOWN Species: Homo sapiens  Data Points: 912  Description: TTANTCA_UNKNOWN Genes with promoter regions [-2kb,2kb] around transcription start site containing motif TTANTCA. Motif does not match any known transcription factor c3 - Motif genesets based on conserved cis-regulatory motifs from a comparative analysis of the human, mouse, rat, and dog genomes. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 253 Genes GS316887: GO:0005783 endoplasmic reticulum Figure Label: GO:0005783 Species: Rattus norvegicus  Data Points: 253  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "endoplasmic reticulum", which is defined as "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached)." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat CTD 2331 Genes GS262833: Thioacetamide interacting with Rattus norvegicus associated genes (MeSH:D013853) in CTD Figure Label: Thioacetamide R.n. Species: Rattus norvegicus  Data Points: 2331  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Thioacetamide' (D013853). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 761 Genes GS126548: Isotretinoin interacting with Homo sapiens associated genes (MeSH:D015474) in CTD Figure Label: Isotretinoin H.s. Species: Homo sapiens  Data Points: 761  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Isotretinoin' (D015474). Incorporates data from 38 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 597 Genes GS84293: METH responses for home cage activity (Published QTL, Chr 16) Figure Label: QTL for METH responses for home cage activity on Chr16 at Comt (22.04 Mbp , Build 37) Species: Mus musculus  Data Points: 597  Description: METH responses for home cage activity spans 0.00 - 47.04 Mbp (NCBI Build 37) on Chr16. This interval was obtained by using an interval width of 25 Mbp around the peak marker (Build 37, MGI, http://informatics.jax.org). Available to: Everyone (Tier II)
	Tier II Human 17815 Genes GS238409: [MeSH] Gene Components : D040461 Figure Label: Gene Components Species: Homo sapiens  Data Points: 17815  Description: The parts of the gene sequence that carry out the different functions of the GENES. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse CTD 6019 Genes GS257379: Acetaminophen interacting with Mus musculus associated genes (MeSH:D000082) in CTD Figure Label: Acetaminophen M.m. Species: Mus musculus  Data Points: 6019  Description: Genes associated with Mus musculus that interact with the MeSH term 'Acetaminophen' (D000082). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 482 Genes GS136195: learning-contextual 9 (Lrnx9, Published QTL Chr 16) Figure Label: QTL-Lrnx9-Mouse-Chr 16 Species: Mus musculus  Data Points: 482  Description: QTL associated with learning-contextual 9. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (29406628) Available to: Everyone (Tier II)
	Tier I Rat GO 1 Genes GS316868: GO:0071712 ER-associated misfolded protein catabolic process Figure Label: GO:0071712 Species: Rattus norvegicus  Data Points: 1  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "ER-associated misfolded protein catabolic process", which is defined as "The chemical reactions and pathways resulting in the breakdown of misfolded proteins transported from the endoplasmic reticulum and targeted to cytoplasmic proteasomes for degradation." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I CTD 1954 Genes GS261132: AZM551248 interacting with Canis lupus familiaris associated genes (MeSH:C547126) in CTD Figure Label: AZM551248 C.l.f. Species: Canis familiaris  Data Points: 1954  Description: Genes associated with Canis lupus familiaris that interact with the MeSH term 'AZM551248' (C547126). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 3119 Genes GS256891: Folic Acid interacting with Mus musculus associated genes (MeSH:D005492) in CTD Figure Label: Folic Acid M.m. Species: Mus musculus  Data Points: 3119  Description: Genes associated with Mus musculus that interact with the MeSH term 'Folic Acid' (D005492). Incorporates data from 54 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human 188 Genes GS229390: MSigDB Geneset - GSE12845_PRE_GC_VS_DARKZONE_GC_TONSIL_BCELL_UP Figure Label: GSE12845_PRE_GC_VS_DARKZONE_GC_TONSIL_BCELL_UP Species: Homo sapiens  Data Points: 188  Description: GSE12845_PRE_GC_VS_DARKZONE_GC_TONSIL_BCELL_UP Genes up-regulated in comparison of pre-germinal center B cells versus dark zone germinal center B cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat GO 2235 Genes GS319197: GO:0043227 membrane-bounded organelle Figure Label: GO:0043227 Species: Rattus norvegicus  Data Points: 2235  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "membrane-bounded organelle", which is defined as "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 7052 Genes GS243346: [MeSH] Chromosomes, Human : D002877 Figure Label: Chromosomes, Human Species: Homo sapiens  Data Points: 7052  Description: Very long DNA molecules and associated proteins, HISTONES, and non-histone chromosomal proteins (CHROMOSOMAL PROTEINS, NON-HISTONE). Normally 46 chromosomes, including two sex chromosomes are found in the nucleus of human cells. They carry the hereditary information of the individual. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 551 Genes GS317399: GO:0019899 enzyme binding Figure Label: GO:0019899 Species: Rattus norvegicus  Data Points: 551  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "enzyme binding", which is defined as "Interacting selectively and non-covalently with any enzyme." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Zebrafish CTD 683 Genes GS261978: sodium arsenate interacting with Danio rerio associated genes (MeSH:C009277) in CTD Figure Label: sodium arsenate D.r. Species: Danio rerio  Data Points: 683  Description: Genes associated with Danio rerio that interact with the MeSH term 'sodium arsenate' (C009277). Incorporates data from 9 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 18638 Genes GS239190: [MeSH] Genome : D016678 Figure Label: Genome Species: Homo sapiens  Data Points: 18638  Description: The genetic complement of an organism, including all of its GENES, as represented in its DNA, or in some cases, its RNA. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Zebrafish CTD 253 Genes GS261956: sodium bichromate interacting with Danio rerio associated genes (MeSH:C016104) in CTD Figure Label: sodium bichromate D.r. Species: Danio rerio  Data Points: 253  Description: Genes associated with Danio rerio that interact with the MeSH term 'sodium bichromate' (C016104). Incorporates data from 6 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 15903 Genes GS234668: [MeSH] Open Reading Frames : D016366 Figure Label: Open Reading Frames Species: Homo sapiens  Data Points: 15903  Description: A sequence of successive nucleotide triplets that are read as CODONS specifying AMINO ACIDS and begin with an INITIATOR CODON and end with a stop codon (CODON, TERMINATOR). Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Mouse CTD 2590 Genes GS257173: Carbon Tetrachloride interacting with Mus musculus associated genes (MeSH:D002251) in CTD Figure Label: Carbon Tetrachloride M.m. Species: Mus musculus  Data Points: 2590  Description: Genes associated with Mus musculus that interact with the MeSH term 'Carbon Tetrachloride' (D002251). Incorporates data from 7 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 1995 Genes GS322409: GO:0042221 response to chemical Figure Label: GO:0042221 Species: Rattus norvegicus  Data Points: 1995  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to chemical", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier II Human 7246 Genes GS245913: [MeSH] Protein Processing, Post-Translational : D011499 Figure Label: Protein Processing, Post-Translational Species: Homo sapiens  Data Points: 7246  Description: Any of various enzymatically catalyzed post-translational modifications of PEPTIDES or PROTEINS in the cell of origin. These modifications include carboxylation; HYDROXYLATION; ACETYLATION; PHOSPHORYLATION; METHYLATION; GLYCOSYLATION; ubiquitination; oxidation; proteolysis; and crosslinking and result in changes in molecular weight and electrophoretic motility. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Human 255 Genes GS232229: PC Geneset - "V$TTF1_Q6" pathway genes Figure Label: V$TTF1_Q6 Species: Homo sapiens  Data Points: 255  Description: Pathway Commons (PC) Geneset. This geneset contains genes that participate in the "V$TTF1_Q6" pathway. This set was automatically constructed using the PC API. The original source of this geneset is TRANSFAC. gene2pc v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat CTD 13841 Genes GS267227: bisphenol A interacting with Rattus norvegicus associated genes (MeSH:C006780) in CTD Figure Label: bisphenol A R.n. Species: Rattus norvegicus  Data Points: 13841  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'bisphenol A' (C006780). Incorporates data from 3 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human 183 Genes GS230009: MSigDB Geneset - GSE29614_DAY3_VS_DAY7_TIV_FLU_VACCINE_PBMC_DN Figure Label: GSE29614_DAY3_VS_DAY7_TIV_FLU_VACCINE_PBMC_DN Species: Homo sapiens  Data Points: 183  Description: GSE29614_DAY3_VS_DAY7_TIV_FLU_VACCINE_PBMC_DN Genes down-regulated in comparison of peripheral blood mononuclear cells (PBMC) from TIV influenza vaccinee at day 3 post-vaccination versus those at day 7 post-vaccination. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Human CTD 73 Genes GS251453: Polystyrenes interacting with Homo sapiens associated genes (MeSH:D011137) in CTD Figure Label: Polystyrenes H.s. Species: Homo sapiens  Data Points: 73  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Polystyrenes' (D011137). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 1016 Genes GS260257: lead acetate interacting with Mus musculus associated genes (MeSH:C008261) in CTD Figure Label: lead acetate M.m. Species: Mus musculus  Data Points: 1016  Description: Genes associated with Mus musculus that interact with the MeSH term 'lead acetate' (C008261). Incorporates data from 2 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 3049 Genes GS256683: Methionine interacting with Mus musculus associated genes (MeSH:D008715) in CTD Figure Label: Methionine M.m. Species: Mus musculus  Data Points: 3049  Description: Genes associated with Mus musculus that interact with the MeSH term 'Methionine' (D008715). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human 192 Genes GS230579: MSigDB Geneset - GSE17974_CTRL_VS_ACT_IL4_AND_ANTI_IL12_24H_CD4_TCELL_DN Figure Label: GSE17974_CTRL_VS_ACT_IL4_AND_ANTI_IL12_24H_CD4_TCELL_DN Species: Homo sapiens  Data Points: 192  Description: GSE17974_CTRL_VS_ACT_IL4_AND_ANTI_IL12_24H_CD4_TCELL_DN Genes down-regulated in comparison of untreated CD4 [GeneID=920] T cells at 0 h versus the cells treated with IL4 [GeneID=3565] and anti-IL12 at 24 h. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Rat CTD 2821 Genes GS263730: Cuprizone interacting with Rattus norvegicus associated genes (MeSH:D003471) in CTD Figure Label: Cuprizone R.n. Species: Rattus norvegicus  Data Points: 2821  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Cuprizone' (D003471). Incorporates data from 244 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Human 6142 Genes GS243838: [MeSH] Nuclear Proteins : D009687 Figure Label: Nuclear Proteins Species: Homo sapiens  Data Points: 6142  Description: Proteins found in the nucleus of a cell. Do not confuse with NUCLEOPROTEINS which are proteins conjugated with nucleic acids, that are not necessarily present in the nucleus. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Human 17816 Genes GS241744: [MeSH] DNA, Single-Stranded : D004277 Figure Label: DNA, Single-Stranded Species: Homo sapiens  Data Points: 17816  Description: A single chain of deoxyribonucleotides that occurs in some bacteria and viruses. It usually exists as a covalently closed circle. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier I Rat GO 2664 Genes GS327585: GO:0050896 response to stimulus Figure Label: GO:0050896 Species: Rattus norvegicus  Data Points: 2664  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to stimulus", which is defined as "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Rat CTD 3864 Genes GS266608: vinclozolin interacting with Rattus norvegicus associated genes (MeSH:C025643) in CTD Figure Label: vinclozolin R.n. Species: Rattus norvegicus  Data Points: 3864  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'vinclozolin' (C025643). Incorporates data from 12 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Mouse CTD 5545 Genes GS260330: pirinixic acid interacting with Mus musculus associated genes (MeSH:C006253) in CTD Figure Label: pirinixic acid M.m. Species: Mus musculus  Data Points: 5545  Description: Genes associated with Mus musculus that interact with the MeSH term 'pirinixic acid' (C006253). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 553 Genes GS251688: Dicyclomine interacting with Homo sapiens associated genes (MeSH:D004025) in CTD Figure Label: Dicyclomine H.s. Species: Homo sapiens  Data Points: 553  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Dicyclomine' (D004025). Incorporates data from 622 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Rat GO 25 Genes GS317340: GO:0034976 response to endoplasmic reticulum stress Figure Label: GO:0034976 Species: Rattus norvegicus  Data Points: 25  Description: Gene Ontology (GO) gene set. This set contains genes that have been annotated to the GO term "response to endoplasmic reticulum stress", which is defined as "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stress acting at the endoplasmic reticulum. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen." This gene set was automatically constructed using annotation and ontology data provided by GO and only includes annotations with experimental and curatorial evidence codes (EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC). The transitive closure of this term is taken into account using is_a and part_of relationships. For more information: The Gene Ontology Consortium (GOC), http://geneontology.org This gene set was generated using the GeneWeaver GO loader v. 0.2.8. Available to: Everyone (Tier I)
	Tier I Mouse 198 Genes GS227751: MSigDB Geneset - GSE15324_NAIVE_VS_ACTIVATED_CD8_TCELL_DN Figure Label: GSE15324_NAIVE_VS_ACTIVATED_CD8_TCELL_DN Species: Mus musculus  Data Points: 198  Description: GSE15324_NAIVE_VS_ACTIVATED_CD8_TCELL_DN Genes down-regulated in comparison of naive CD8 T cells versus activated CD8 T cells. c7 - Genesets containing immunologic signatures defined directly from microarray gene expression data from immunologic studies. Molecular Signatures Database (MSigDB) Geneset. This geneset was imported from one of the MSigDB collections. gene2msig v. 0.1.0 Last updated 2015.08.31 Available to: Everyone (Tier I)
	Tier I Mouse CTD 423 Genes GS256667: Methylmercury Compounds interacting with Mus musculus associated genes (MeSH:D008767) in CTD Figure Label: Methylmercury Compounds M.m. Species: Mus musculus  Data Points: 423  Description: Genes associated with Mus musculus that interact with the MeSH term 'Methylmercury Compounds' (D008767). Incorporates data from 102 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 3490 Genes GS127166: bisphenol A interacting with Oryzias latipes associated genes (MeSH:C006780) in CTD Figure Label: bisphenol A O.l. Species: Homo sapiens  Data Points: 3490  Description: Genes associated with Oryzias latipes that interact with the MeSH term 'bisphenol A' (C006780). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier I Human CTD 3952 Genes GS126200: Nickel interacting with Homo sapiens associated genes (MeSH:D009532) in CTD Figure Label: Nickel H.s. Species: Homo sapiens  Data Points: 3952  Description: Genes associated with Homo sapiens that interact with the MeSH term 'Nickel' (D009532). Incorporates data from 166 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 475 Genes GS136288: modifier of polycystic kidney disease progression 2 (Mopkd2, Published QTL Chr 16) Figure Label: QTL-Mopkd2-Mouse-Chr 16 Species: Mus musculus  Data Points: 475  Description: QTL associated with modifier of polycystic kidney disease progression 2. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (21827637) Available to: Everyone (Tier II)
	Tier II Human 18556 Genes GS245795: [MeSH] Genes : D005796 Figure Label: Genes Species: Homo sapiens  Data Points: 18556  Description: A category of nucleic acid sequences that function as units of heredity and which code for the basic instructions for the development, reproduction, and maintenance of organisms. Generated by gene2mesh v. 1.1.1 Available to: Everyone (Tier II)
	Tier II Mouse 339 Genes GS136314: non-HDL QTL 10 (Nhdlq10, Published QTL Chr 16) Figure Label: QTL-Nhdlq10-Mouse-Chr 16 Species: Mus musculus  Data Points: 339  Description: QTL associated with non-HDL QTL 10. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (7445973) Available to: Everyone (Tier II)
	Tier I Rat CTD 59 Genes GS262401: Nanotubes, Carbon interacting with Rattus norvegicus associated genes (MeSH:D037742) in CTD Figure Label: Nanotubes, Carbon R.n. Species: Rattus norvegicus  Data Points: 59  Description: Genes associated with Rattus norvegicus that interact with the MeSH term 'Nanotubes, Carbon' (D037742). Incorporates data from 1 publications curated by the Comparative Toxicogenomics Database (CTD). ODE Gene scores represent number of supporting publications per gene. Available to: Everyone (Tier I)
	Tier II Mouse 415 Genes GS135361: B. burgdorferi-associated arthritis 19 (Bbaa19, Published QTL Chr 16) Figure Label: QTL-Bbaa19-Mouse-Chr 16 Species: Mus musculus  Data Points: 415  Description: QTL associated with B. burgdorferi-associated arthritis 19. This interval was obtained by using a fixed interval width of 25 Mbp around the peak marker (13249057) Available to: Everyone (Tier II)
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