Batch GeneSet Upload

Use the batch upload page to submit multiple gene sets. The upload file format is given below.






Format:
            Metadata (header) format is as follows:
            # comments start with '#'
            : GeneSet Abbreviation starts with ':' (required)
            = GeneSet Name starts with '=' (required)
            + GeneSet Description (required)
            +   starts with '+' and can span multiple lines
            P PubmedID (optional)
            A Public or Private (opt, default private)

            ! score type starts with '!' (required)
            ! Binary
            ! P-Value < 0.05 
            ! Q-Value < 0.05 
            ! 0.40 < Correlation < 0.90 
            ! 6.0 < Effect < 22.50 

            @ Species Scientific Name (required) (List updated daily)
            @ 
            @ Mus musculus
            @ Homo sapiens
            @ Rattus norvegicus
            @ Danio rerio
            @ Drosophila melanogaster
            @ Macaca mulatta
            @ Caenorhabditis elegans
            @ Saccharomyces cerevisiae
            @ Gallus gallus
            @ Canis familiaris

            % Gene ID Type (required) (List updated daily)
            % Entrez
            % Ensembl Gene
            % Ensembl Protein
            % Ensembl Transcript
            % Unigene
            % Gene Symbol
            % Unannotated
            % MGI
            % HGNC
            % RGD
            % ZFIN
            % FlyBase
            % Wormbase
            % SGD
            % miRBase
            % CGNC
            % microarray Affymetrix C. elegans Genome Array
            % microarray Affymetrix Drosophila Genome 2.0
            % microarray Affymetrix HT Human Genome U133A
            % microarray Affymetrix Human 35K Set
            % microarray Affymetrix Human 35K SubA
            % microarray Affymetrix Human 35K SubB
            % microarray Affymetrix Human 35K SubC
            % microarray Affymetrix Human 35K SubD
            % microarray Affymetrix Human Gene 1.0 ST
            % microarray Affymetrix Human Genome U133A
            % microarray Affymetrix Human Genome U133A 2.0
            % microarray Affymetrix Human Genome U133B
            % microarray Affymetrix Human Genome U133 Plus 2.0
            % microarray Affymetrix Human Genome U133 Set
            % microarray Affymetrix Human HG-Focus Target
            % microarray Affymetrix Mouse Exon 1.0 ST
            % microarray Affymetrix Mouse Expression 430A
            % microarray Affymetrix Mouse Expression 430B
            % microarray Affymetrix Mouse Expression 430 Set
            % microarray Affymetrix Mouse Gene 1.0 ST Array
            % microarray Affymetrix Mouse Genome 430 2.0
            % microarray Affymetrix Mouse Genome 430A 2.0
            % microarray Affymetrix Murine 11K Set
            % microarray Affymetrix Murine 11K SubA
            % microarray Affymetrix Murine 11K SubB
            % microarray Affymetrix Murine Genome U74A
            % microarray Affymetrix Murine Genome U74B
            % microarray Affymetrix Murine Genome U74C
            % microarray Affymetrix Murine Genome U74 Set
            % microarray Affymetrix Murine Genome U74 Version 2
            % microarray Affymetrix Murine Genome U74 Version 2
            % microarray Affymetrix Murine Genome U74 Version 2
            % microarray Affymetrix Murine Genome U74 Version 2 Set
            % microarray Affymetrix Rat Exon 1.0 ST
            % microarray Affymetrix Rat Expression 230A
            % microarray Affymetrix Rat Expression 230B
            % microarray Affymetrix Rat Expression 230 Set
            % microarray Affymetrix Rat Genome 230 2.0
            % microarray Affymetrix Rhesus Macaque Genome
            % microarray Affymetrix Yeast Genome 2.0 Array
            % microarray Affymetrix Yeast Genome S98 Array
            % microarray Affymetrix Zebrafish Genome
            % microarray Agilent Mouse G4121A (Toxicogenomics)
            % microarray Agilent Mouse GE 4x44K v2
            % microarray Agilent Mouse Whole Genome G4122F
            % microarray Agilent Whole Rat Genome 4x44K v2
            % microarray Illumina Human-6 v2.0
            % microarray Illumina MouseRef-8 v2.0
            % microarray Illumina MouseWG-6 v1.1
            % microarray Illumina MouseWG-6 v2.0

            After the metadata, leave a blank line. Then list all data points in
            the following format: gene id <tab> data value <enter>.  

            At the end of the data points leave another blank line.  Then you may start 
            another metadata section and keep repeating for all datasets in the same file.
            The 'P', 'A', '!', '@', and '%' sections may be ommitted in later sections if
            they do not differ from the first, they will default to the last seen value.
            The ':', '=', and '+' sections are required for all datasets.

            A example batch file with descriptive comments is available here.