Analyze GeneSets

Your projects are listed below. Select a project to analyze. Click "+" to expand your project and select individual gene sets. Click on one of the tools buttons below to analyze your gene sets. Click Delete to remove individual projects. This will not delete your GeneSets from the ODE database.

Analysis Tools This tool uses the Biclique algorithm to generate a tree of phenotype-gene relations based on the genesets selected. Options for Phenome Map DisableBootstrap: False True HideUnEmphasized: False True Homology: Included Excluded MaxInNode: 4 8 12 16 20 24 28 32 MaxLevel: 0 20 40 60 80 100 MinGenes: 1 2 3 4 5 6 7 8 9 10 15 20 25 Permutations: 100000 50000 25000 5000 1000 500 100 0 PermutationTimeLimit: 5 10 15 20 p-Value: 1.0 0.5 0.10 0.05 0.01 UseFDR: False True More info... Visualize the Gene-GeneSet graph. Options for GeneSet Graph Homology: Included Excluded MinDegree: 0 Auto 1 2 3 4 5 10 20 SupressDisconnected: Off On More info... This tool computes the Jaccard Coefficient (a measure of similarity) for multiple genesets. Options for Jaccard Similarity Homology: Included Excluded PairwiseDeletion: Disabled Enabled More info... Perform Fisher's exact test against the Hypergeometric distribution on all pairwise GeneSet intersections Options for Hypergeometric Tests Homology: Included Excluded PairwiseDeletion: Disabled Enabled More info... This tool computes the Jaccard Distance (a measure of dissimilarity) for multiple genesets, then uses them to cluster Options for Clustering Homology: Included Excluded Method: Ward Single Centroid McQuitty Average Complete Median More info... Project Utilities Combine ABBA gene-seeded search Boolean Algebra Emphasis Genes   use

You do not have any projects. You can either use your own GeneSets, or search for GeneSets to add to a new project. Once you have a project created, you only need to select it and then click on the button for the analysis you'd like to run.